RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 NKIRAS1Q9NYS0 192 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 NOD1Q9Y239 953 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 SYCE3A1L190 88 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 CCDC129Q6ZRS4 1044 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 RAB11FIP4Q86YS3 637 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 CCDC50Q8IVM0 306 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 FSIP1Q8NA03 581 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 KIF1BPQ96EK5 621 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 HAUS2Q9NVX0 235 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 RSPH14Q9UHP6 348 aa12.05□□□□□ -0.48
RTN3-206ENST00000377819 TAOK1Q7L7X3 1001 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 TMC6Q7Z403 805 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 SELENOSQ9BQE4 189 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 KAT14Q9H8E8 782 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 ZNF219Q9P2Y4 722 aaPredicted RBP12.04□□□□□ -0.48
RTN3-206ENST00000377819 MTUS1Q9ULD2 1270 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 RAB3GAP2Q9H2M9 1393 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 BMP15O95972 392 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 INTS8Q75QN2 995 aaKnown RBP12.04□□□□□ -0.48
RTN3-206ENST00000377819 C16orf45Q96MC5 204 aaPredicted RBP12.04□□□□□ -0.48
RTN3-206ENST00000377819 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.04□□□□□ -0.48
RTN3-206ENST00000377819 A0A1B0GUA9 196 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 LPXNO60711 386 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 SARNPP82979 210 aaKnown RBP12.04□□□□□ -0.48
RTN3-206ENST00000377819 C16orf71Q8IYS4 520 aaPredicted RBP12.04□□□□□ -0.48
RTN3-206ENST00000377819 SEC62Q99442 399 aaKnown RBP12.04□□□□□ -0.48
RTN3-206ENST00000377819 FAM13AO94988 1023 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 MCM4P33991 863 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 OGFOD1Q8N543 542 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 IFT74Q96LB3 600 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 KCNK9Q9NPC2 374 aa12.04□□□□□ -0.48
RTN3-206ENST00000377819 TXNDC2Q86VQ3 553 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 MAK16Q9BXY0 300 aaKnown RBP12.03□□□□□ -0.48
RTN3-206ENST00000377819 RPGRIP1LQ68CZ1 1315 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 FCHSD2O94868 740 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 ATP2B3Q16720 1220 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 BRDTQ58F21 947 aaPredicted RBP12.03□□□□□ -0.48
RTN3-206ENST00000377819 GBP6Q6ZN66 633 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 PHLDB2Q86SQ0 1253 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 CCDC171Q6TFL3 1326 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 ABCA8O94911 1581 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 ESYT2A0FGR8 921 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 CCDC125Q86Z20 511 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 FMNL3Q8IVF7 1028 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 GPR161Q8N6U8 529 aaKnown RBP12.03□□□□□ -0.48
RTN3-206ENST00000377819 ZNF692Q9BU19 519 aaPredicted RBP12.03□□□□□ -0.48
RTN3-206ENST00000377819 PPP1R12CQ9BZL4 782 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 RNF216Q9NWF9 866 aaPredicted RBP12.03□□□□□ -0.48
RTN3-206ENST00000377819 FLIIQ13045 1269 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 RBBP5Q15291 538 aaKnown RBP12.03□□□□□ -0.48
RTN3-206ENST00000377819 LMNTD2Q8IXW0 634 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 ZNF428Q96B54 188 aa12.03□□□□□ -0.48
RTN3-206ENST00000377819 IRX5P78411 483 aaPredicted RBP12.02□□□□□ -0.48
RTN3-206ENST00000377819 CTAGE1Q96RT6 745 aa12.02□□□□□ -0.48
RTN3-206ENST00000377819 ZSCAN16Q9H4T2 348 aaPredicted RBP12.02□□□□□ -0.48
RTN3-206ENST00000377819 E7EVH7 732 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 PSMA7O14818 248 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 RAB11FIP3O75154 756 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 INPP1P49441 399 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 GUCY1B3Q02153 619 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 CEP128Q6ZU80 1094 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 SRGAP1Q7Z6B7 1085 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 RNF34Q969K3 372 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 FAM212AQ96EL1 285 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 PANK2Q9BZ23 570 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 HDAC9Q9UKV0 1011 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 STX8Q9UNK0 236 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 CETN3O15182 167 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 TUBB4BP68371 445 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 CCDC170Q8IYT3 715 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 HAUS8Q9BT25 410 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 TMX1Q9H3N1 280 aa12.02□□□□□ -0.49
RTN3-206ENST00000377819 CROCC2H7BZ55 1655 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 STX10O60499 249 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 VAV2P52735 878 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 MCM6Q14566 821 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 GRIN2AQ12879 1464 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 PTCD1O75127 700 aaKnown RBP12.01□□□□□ -0.49
RTN3-206ENST00000377819 PDE1CQ14123 709 aaPredicted RBP12.01□□□□□ -0.49
RTN3-206ENST00000377819 DIXDC1Q155Q3 683 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 NSMCE1Q8WV22 266 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 USP47Q96K76 1375 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 BIN1O00499 593 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 SMIM24O75264 130 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 PCK1P35558 622 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 PIP4K2BP78356 416 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 MICALL1Q8N3F8 863 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 ZNF526Q8TF50 670 aaPredicted RBP12.01□□□□□ -0.49
RTN3-206ENST00000377819 BEGAINQ9BUH8 593 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 NACA2Q9H009 215 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 CABP2Q9NPB3 220 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 BCAP29Q9UHQ4 241 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 BTBD11A6QL63 1104 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 XRCC6P12956 609 aaKnown RBP eCLIP12.01□□□□□ -0.49
RTN3-206ENST00000377819 ZNF165P49910 485 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 GNAQP50148 359 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 PPP1R21Q6ZMI0 780 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 ARHGAP24Q8N264 748 aa12.01□□□□□ -0.49
RTN3-206ENST00000377819 PRPF40BQ6NWY9 871 aaKnown RBP12□□□□□ -0.49
RTN3-206ENST00000377819 CDC5LQ99459 802 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms