RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 CACNA1SQ13698 1873 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 ATP5J2-PTCD1G3V325 749 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 ZNF500O60304 480 aaPredicted RBP11.5□□□□□ -0.57
TRIM39-202ENST00000376659 PTCD1O75127 700 aaKnown RBP11.5□□□□□ -0.57
TRIM39-202ENST00000376659 CDC37L1Q7L3B6 337 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 SMARCC2Q8TAQ2 1214 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 ZCRB1Q8TBF4 217 aaKnown RBP11.5□□□□□ -0.57
TRIM39-202ENST00000376659 SEC62Q99442 399 aaKnown RBP11.5□□□□□ -0.57
TRIM39-202ENST00000376659 CYP46A1Q9Y6A2 500 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 AP5Z1O43299 807 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 DTNBO60941 627 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 CYP21A2P08686 494 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 CABP4P57796 275 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 NEXNQ0ZGT2 675 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 TRIM28Q13263 835 aaKnown RBP11.5□□□□□ -0.57
TRIM39-202ENST00000376659 TAF1LQ8IZX4 1826 aa11.5□□□□□ -0.57
TRIM39-202ENST00000376659 CSF1RP07333 972 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 EXOSC10Q01780 885 aaKnown RBP11.49□□□□□ -0.57
TRIM39-202ENST00000376659 VGLL2Q8N8G2 317 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 ZNF335Q9H4Z2 1342 aaPredicted RBP11.49□□□□□ -0.57
TRIM39-202ENST00000376659 A0A087WZG4 1122 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 CTDNEP1O95476 244 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 ADD1P35611 737 aaKnown RBP11.49□□□□□ -0.57
TRIM39-202ENST00000376659 UBE2HP62256 183 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 OS9Q13438 667 aaPredicted RBP11.49□□□□□ -0.57
TRIM39-202ENST00000376659 SLFNL1Q499Z3 407 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 KBTBD3Q8NAB2 608 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 CCDC191Q8NCU4 936 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 KDM4FA0A1W2PPD8 638 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 A1BGP04217 495 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 ZMYM1Q5SVZ6 1142 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 CCDC129Q6ZRS4 1044 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 GTF3C6Q969F1 213 aa11.49□□□□□ -0.57
TRIM39-202ENST00000376659 MYH13Q9UKX3 1938 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 HSPA2P54652 639 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 LRRC24Q50LG9 513 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 LMBR1LQ6UX01 489 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 NECAB1Q8N987 351 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 TAF1P21675 1872 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 EVCP57679 992 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 ZSCAN30Q86W11 494 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 TTC5Q8N0Z6 440 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 IL2RBP14784 551 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 RESTQ13127 1097 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 MAST3O60307 1309 aa11.48□□□□□ -0.57
TRIM39-202ENST00000376659 LY75O60449 1722 aa11.47□□□□□ -0.57
TRIM39-202ENST00000376659 DNM1Q05193 864 aaKnown RBP11.47□□□□□ -0.57
TRIM39-202ENST00000376659 CCDC183Q5T5S1 534 aa11.47□□□□□ -0.57
TRIM39-202ENST00000376659 FSD1Q9BTV5 496 aa11.47□□□□□ -0.57
TRIM39-202ENST00000376659 CDHR2Q9BYE9 1310 aa11.47□□□□□ -0.57
TRIM39-202ENST00000376659 TTC6Q86TZ1 520 aa11.47□□□□□ -0.57
TRIM39-202ENST00000376659 CWC25Q9NXE8 425 aaPredicted RBP11.47□□□□□ -0.57
TRIM39-202ENST00000376659 SLAIN2Q9P270 581 aa11.47□□□□□ -0.57
TRIM39-202ENST00000376659 KIAA1211Q6ZU35 1233 aa11.47□□□□□ -0.57
TRIM39-202ENST00000376659 ILDR1Q86SU0 546 aaPredicted RBP11.47□□□□□ -0.57
TRIM39-202ENST00000376659 DDX54Q8TDD1 881 aaKnown RBP11.47□□□□□ -0.57
TRIM39-202ENST00000376659 DSCC1Q9BVC3 393 aa11.47□□□□□ -0.57
TRIM39-202ENST00000376659 NEDD4P46934 1319 aa11.46□□□□□ -0.57
TRIM39-202ENST00000376659 M0R2C6 588 aa11.46□□□□□ -0.57
TRIM39-202ENST00000376659 NBPF3Q9H094 633 aa11.46□□□□□ -0.57
TRIM39-202ENST00000376659 MCMDC2Q4G0Z9 681 aa11.46□□□□□ -0.58
TRIM39-202ENST00000376659 NKX2-3Q8TAU0 364 aa11.46□□□□□ -0.58
TRIM39-202ENST00000376659 PUS3Q9BZE2 481 aaKnown RBP11.46□□□□□ -0.58
TRIM39-202ENST00000376659 HELLSQ9NRZ9 838 aa11.46□□□□□ -0.58
TRIM39-202ENST00000376659 CARMIL3Q8ND23 1372 aa11.46□□□□□ -0.58
TRIM39-202ENST00000376659 THSD7AQ9UPZ6 1657 aa11.46□□□□□ -0.58
TRIM39-202ENST00000376659 TSPY26PQ9H489 355 aa11.46□□□□□ -0.58
TRIM39-202ENST00000376659 SMC3Q9UQE7 1217 aa11.46□□□□□ -0.58
TRIM39-202ENST00000376659 CDK5RAP2Q96SN8 1893 aa11.45□□□□□ -0.58
TRIM39-202ENST00000376659 DDX60LQ5H9U9 1706 aaKnown RBP11.45□□□□□ -0.58
TRIM39-202ENST00000376659 EYA2O00167 538 aa11.45□□□□□ -0.58
TRIM39-202ENST00000376659 SCRN1Q12765 414 aa11.45□□□□□ -0.58
TRIM39-202ENST00000376659 PIGBQ92521 554 aa11.45□□□□□ -0.58
TRIM39-202ENST00000376659 NHSQ6T4R5 1651 aa11.45□□□□□ -0.58
TRIM39-202ENST00000376659 MYH2Q9UKX2 1941 aa11.45□□□□□ -0.58
TRIM39-202ENST00000376659 FBXO3Q9UK99 471 aa11.45□□□□□ -0.58
TRIM39-202ENST00000376659 PSMA5P28066 241 aa11.44□□□□□ -0.58
TRIM39-202ENST00000376659 IL15P40933 162 aaPredicted RBP11.44□□□□□ -0.58
TRIM39-202ENST00000376659 ZNF594Q96JF6 807 aaPredicted RBP11.44□□□□□ -0.58
TRIM39-202ENST00000376659 TCEANC2Q96MN5 208 aa11.44□□□□□ -0.58
TRIM39-202ENST00000376659 PAG1Q9NWQ8 432 aa11.44□□□□□ -0.58
TRIM39-202ENST00000376659 PFKFB2O60825 505 aa11.44□□□□□ -0.58
TRIM39-202ENST00000376659 SCARF1Q14162 830 aa11.44□□□□□ -0.58
TRIM39-202ENST00000376659 DDX46Q7L014 1031 aaKnown RBP11.44□□□□□ -0.58
TRIM39-202ENST00000376659 ZNF512BQ96KM6 892 aaPredicted RBP11.44□□□□□ -0.58
TRIM39-202ENST00000376659 U3KPZ7 1027 aaPredicted RBP11.44□□□□□ -0.58
TRIM39-202ENST00000376659 OFD1O75665 1012 aa11.44□□□□□ -0.58
TRIM39-202ENST00000376659 PCCAP05165 728 aaPredicted RBP11.44□□□□□ -0.58
TRIM39-202ENST00000376659 TCIRG1Q13488 830 aa11.44□□□□□ -0.58
TRIM39-202ENST00000376659 ANKRD1Q15327 319 aa11.44□□□□□ -0.58
TRIM39-202ENST00000376659 ZKSCAN5Q9Y2L8 839 aa11.44□□□□□ -0.58
TRIM39-202ENST00000376659 JAK2O60674 1132 aa11.43□□□□□ -0.58
TRIM39-202ENST00000376659 CSB-PGBD3P0DP91 1061 aa11.43□□□□□ -0.58
TRIM39-202ENST00000376659 UVSSAQ2YD98 709 aa11.43□□□□□ -0.58
TRIM39-202ENST00000376659 BLOC1S2Q6QNY1 142 aa11.43□□□□□ -0.58
TRIM39-202ENST00000376659 PGBD1Q96JS3 809 aa11.43□□□□□ -0.58
TRIM39-202ENST00000376659 TNRC6CQ9HCJ0 1690 aaKnown RBP11.43□□□□□ -0.58
TRIM39-202ENST00000376659 NID2Q14112 1375 aa11.43□□□□□ -0.58
TRIM39-202ENST00000376659 HSPD1P10809 573 aaKnown RBP11.43□□□□□ -0.58
TRIM39-202ENST00000376659 ZKSCAN1P17029 563 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms