RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 GPLD1P80108 840 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 LCE5AQ5TCM9 118 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 COL26A1Q96A83 441 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 EFCC1Q9HA90 598 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 TLR7Q9NYK1 1049 aaKnown RBP4.6□□□□□ -1.67
VPS13A-206ENST00000376646 PTCD1O75127 700 aaKnown RBP4.6□□□□□ -1.67
VPS13A-206ENST00000376646 APBA3O96018 575 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 EGFRP00533 1210 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 ITGB7P26010 798 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 COL13A1Q5TAT6 717 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-206ENST00000376646 STIM2Q9P246 746 aa4.6□□□□□ -1.67
VPS13A-206ENST00000376646 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-206ENST00000376646 MSL1Q68DK7 614 aa4.59□□□□□ -1.67
VPS13A-206ENST00000376646 GDF6Q6KF10 455 aaPredicted RBP4.59□□□□□ -1.67
VPS13A-206ENST00000376646 WDR26Q9H7D7 661 aa4.59□□□□□ -1.67
VPS13A-206ENST00000376646 TPSG1Q9NRR2 321 aa4.59□□□□□ -1.67
VPS13A-206ENST00000376646 LOC102724428A0A0B4J2F2 783 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 SCO2A0A1W2PP80 73 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 A6NHS1 94 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 CYP2E1P05181 493 aaPredicted RBP4.58□□□□□ -1.68
VPS13A-206ENST00000376646 PSAPP07602 524 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 NRLP54845 237 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 SIK1P57059 783 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 FMR1NBQ8N0W7 255 aaPredicted RBP4.58□□□□□ -1.68
VPS13A-206ENST00000376646 PLD4Q96BZ4 506 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 ELNP15502 786 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 ADAMTSL4Q6UY14 1074 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 ILDR2Q71H61 639 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 NLRP13Q86W25 1043 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 PIK3R5Q8WYR1 880 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 SEMA6BQ9H3T3 888 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 TRIM33Q9UPN9 1127 aa4.58□□□□□ -1.68
VPS13A-206ENST00000376646 DEAF1O75398 565 aaPredicted RBP4.57□□□□□ -1.68
VPS13A-206ENST00000376646 RAC1P63000 192 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 ATP11AP98196 1134 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 NUDT16Q96DE0 195 aaKnown RBP4.57□□□□□ -1.68
VPS13A-206ENST00000376646 ARID3AQ99856 593 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 FRRS1LQ9P0K9 344 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 MBTPS1Q14703 1052 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 PCSK7Q16549 785 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 PHLDB3Q6NSJ2 640 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 WFDC8Q8IUA0 241 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 GTF3C2Q8WUA4 911 aaPredicted RBP4.57□□□□□ -1.68
VPS13A-206ENST00000376646 C11orf16Q9NQ32 467 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 TMEM63CQ9P1W3 806 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 USP21Q9UK80 565 aa4.57□□□□□ -1.68
VPS13A-206ENST00000376646 SUPT5HO00267 1087 aaKnown RBP4.56□□□□□ -1.68
VPS13A-206ENST00000376646 MPSTP25325 297 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 SSFA2P28290 1259 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 CDC25BP30305 580 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 DNM1Q05193 864 aaKnown RBP4.56□□□□□ -1.68
VPS13A-206ENST00000376646 RSPO4Q2I0M5 234 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-206ENST00000376646 ANO2Q9NQ90 1003 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 GHRHP01286 108 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 ARTNQ5T4W7 220 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 TXNDC11Q6PKC3 985 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 IL22RA1Q8N6P7 574 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 OR13H1Q8NG92 308 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 HELQQ8TDG4 1101 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 EDEM1Q92611 657 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 KANSL3Q9P2N6 904 aa4.56□□□□□ -1.68
VPS13A-206ENST00000376646 ACPPP15309 386 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 SOX18P35713 384 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 NRG1Q02297 640 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-206ENST00000376646 ADGRE1Q14246 886 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 NKAPLQ5M9Q1 402 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 NACC1Q96RE7 527 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 LACRTQ9GZZ8 138 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 GGNBP2Q9H3C7 697 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 CNTN3Q9P232 1028 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 TRPA1O75762 1119 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 ARID4AP29374 1257 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-206ENST00000376646 EIF1AXP47813 144 aaKnown RBP4.55□□□□□ -1.68
VPS13A-206ENST00000376646 FBXO11Q86XK2 927 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 ABTB2Q8N961 1025 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 LENG1Q96BZ8 264 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-206ENST00000376646 RASSF4Q9H2L5 321 aa4.55□□□□□ -1.68
VPS13A-206ENST00000376646 ABI2Q9NYB9 513 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-206ENST00000376646 C9orf172C9J069 976 aa4.54□□□□□ -1.68
VPS13A-206ENST00000376646 ALX3O95076 343 aa4.54□□□□□ -1.68
VPS13A-206ENST00000376646 ZNF211Q13398 564 aaPredicted RBP4.54□□□□□ -1.68
VPS13A-206ENST00000376646 C8orf34Q49A92 452 aa4.54□□□□□ -1.68
VPS13A-206ENST00000376646 TTC39BQ5VTQ0 682 aaPredicted RBP4.54□□□□□ -1.68
VPS13A-206ENST00000376646 ELP3Q9H9T3 547 aa4.54□□□□□ -1.68
VPS13A-206ENST00000376646 PPP1R15AO75807 674 aaPredicted RBP4.53□□□□□ -1.68
VPS13A-206ENST00000376646 ABL1P00519 1130 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 HOXD8P13378 290 aaPredicted RBP4.53□□□□□ -1.68
VPS13A-206ENST00000376646 IREB2P48200 963 aaKnown RBP4.53□□□□□ -1.68
VPS13A-206ENST00000376646 CEP135Q66GS9 1140 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 ZNF438Q7Z4V0 828 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 TXNRD3Q86VQ6 643 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 C1orf127Q8N9H9 656 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 TTC9Q92623 222 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 FAM13BQ9NYF5 915 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 DYRK3O43781 588 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 PDGFAP04085 211 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 SETDB1Q15047 1291 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 NOM1Q5C9Z4 860 aaKnown RBP4.53□□□□□ -1.68
VPS13A-206ENST00000376646 HHIPQ96QV1 700 aa4.53□□□□□ -1.68
VPS13A-206ENST00000376646 POLIQ9UNA4 740 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms