RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TRAF1Q13077 416 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 MIPOL1Q8TD10 442 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 STX8Q9UNK0 236 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 ZFYP08048 801 aaPredicted RBP14.14□□□□□ -0.15
VPS13A-204ENST00000376634 TBC1D31Q96DN5 1066 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 ZMYND15Q9H091 742 aa14.14□□□□□ -0.15
VPS13A-204ENST00000376634 DBF4Q9UBU7 674 aaPredicted RBP14.14□□□□□ -0.15
VPS13A-204ENST00000376634 TUBB4BP68371 445 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 MCM6Q14566 821 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 STIM2Q9P246 746 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 RSPH14Q9UHP6 348 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 TTC31Q49AM3 519 aaPredicted RBP14.13□□□□□ -0.15
VPS13A-204ENST00000376634 GTPBP4Q9BZE4 634 aaKnown RBP14.13□□□□□ -0.15
VPS13A-204ENST00000376634 IRX3P78415 501 aaPredicted RBP14.13□□□□□ -0.15
VPS13A-204ENST00000376634 RSRC1Q96IZ7 334 aaKnown RBP14.13□□□□□ -0.15
VPS13A-204ENST00000376634 PANK2Q9BZ23 570 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 ORC3Q9UBD5 711 aaPredicted RBP14.13□□□□□ -0.15
VPS13A-204ENST00000376634 PIK3R4Q99570 1358 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 TACC1O75410 805 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 GJC1P36383 396 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 RNF216Q9NWF9 866 aaPredicted RBP14.13□□□□□ -0.15
VPS13A-204ENST00000376634 RRAGBQ5VZM2 374 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 SRRTQ9BXP5 876 aaKnown RBP14.13□□□□□ -0.15
VPS13A-204ENST00000376634 CNNM2Q9H8M5 875 aa14.13□□□□□ -0.15
VPS13A-204ENST00000376634 SSFA2P28290 1259 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 CCDC110Q8TBZ0 833 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 NUDT16Q96DE0 195 aaKnown RBP14.12□□□□□ -0.15
VPS13A-204ENST00000376634 MAP3K2Q9Y2U5 619 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 DPH6Q7L8W6 267 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 SSH1Q8WYL5 1049 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 ZNF219Q9P2Y4 722 aaPredicted RBP14.12□□□□□ -0.15
VPS13A-204ENST00000376634 SWAP70Q9UH65 585 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 ARID5AQ03989 594 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 TAF12Q16514 161 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 PPP1R42Q7Z4L9 355 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 CCDC117Q8IWD4 279 aaPredicted RBP14.12□□□□□ -0.15
VPS13A-204ENST00000376634 CCDC8Q9H0W5 538 aaPredicted RBP14.12□□□□□ -0.15
VPS13A-204ENST00000376634 C6orf50Q9HD87 102 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 TTC21BQ7Z4L5 1316 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 HAND2P61296 217 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 GOLGA1Q92805 767 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 MRC2Q9UBG0 1479 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 KDM5AP29375 1690 aaKnown RBP14.12□□□□□ -0.15
VPS13A-204ENST00000376634 PSMA7O14818 248 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 ATRIPQ8WXE1 791 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 CCDC61Q9Y6R9 512 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 CTAGE15A4D2H0 777 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 CTAGE8P0CG41 777 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 ASIC1P78348 528 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 CTAGE6Q86UF2 777 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 CTAGE4Q8IX94 777 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 SELENOSQ9BQE4 189 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.12□□□□□ -0.15
VPS13A-204ENST00000376634 AFMP43652 599 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 RTN1Q16799 776 aa14.12□□□□□ -0.15
VPS13A-204ENST00000376634 CALM1P0DP23 149 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 CALM2P0DP24 149 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 CALM3P0DP25 149 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 PTGS1P23219 599 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 SLFN5Q08AF3 891 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 FAM184BQ9ULE4 1060 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 BICDL2A1A5D9 508 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 DNMBPQ6XZF7 1577 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 NBPF6Q5VWK0 638 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 NBPF5PQ86XG9 351 aaPredicted RBP14.11□□□□□ -0.15
VPS13A-204ENST00000376634 NBPF4Q96M43 638 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 CDK13Q14004 1512 aaKnown RBP14.11□□□□□ -0.15
VPS13A-204ENST00000376634 PPP1R7Q15435 360 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 CCDC152Q4G0S7 254 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 UBE3BQ7Z3V4 1068 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 PFDN4Q9NQP4 134 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 FMNL3Q8IVF7 1028 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 SPDYE3A6NKU9 549 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 FAM13AO94988 1023 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 PLCB3Q01970 1234 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 ECHDC1Q9NTX5 307 aa14.11□□□□□ -0.15
VPS13A-204ENST00000376634 KRT86O43790 486 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 CIB2O75838 187 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 CCT6BQ92526 530 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 SAMD15Q9P1V8 674 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 SPAG1Q07617 926 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 TBC1D9Q6ZT07 1266 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 CEP128Q6ZU80 1094 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 CCDC114Q96M63 670 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 THUMPD2Q9BTF0 503 aaKnown RBP14.1□□□□□ -0.15
VPS13A-204ENST00000376634 RTL9Q8NET4 1388 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 GPTP24298 496 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 HAUS7Q99871 368 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 ATP6V0A2Q9Y487 856 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 SETDB1Q15047 1291 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 TROQ12816 1431 aaPredicted RBP14.1□□□□□ -0.15
VPS13A-204ENST00000376634 SARNPP82979 210 aaKnown RBP14.1□□□□□ -0.15
VPS13A-204ENST00000376634 ANO6Q4KMQ2 910 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 TSPOAP1O95153 1857 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 GEN1Q17RS7 908 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 ESR2Q92731 530 aa14.1□□□□□ -0.15
VPS13A-204ENST00000376634 STMN2Q93045 179 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 ZSCAN23Q3MJ62 389 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 ZBTB43O43298 467 aa14.09□□□□□ -0.15
VPS13A-204ENST00000376634 UVSSAQ2YD98 709 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms