RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 PIM2Q9P1W9 311 aa18.87■□□□□ 0.61
CCDC40-202ENST00000374876 TNRC6CQ9HCJ0 1690 aaKnown RBP18.86■□□□□ 0.61
CCDC40-202ENST00000374876 H7C1W4 665 aa18.86■□□□□ 0.61
CCDC40-202ENST00000374876 RILPL2Q969X0 211 aa18.86■□□□□ 0.61
CCDC40-202ENST00000374876 BRPF3Q9ULD4 1205 aa18.86■□□□□ 0.61
CCDC40-202ENST00000374876 AOX1Q06278 1338 aa18.86■□□□□ 0.61
CCDC40-202ENST00000374876 GPR162Q16538 588 aa18.86■□□□□ 0.61
CCDC40-202ENST00000374876 IL1RAPL2Q9NP60 686 aa18.86■□□□□ 0.61
CCDC40-202ENST00000374876 BCS1LQ9Y276 419 aa18.86■□□□□ 0.61
CCDC40-202ENST00000374876 YBX3P16989 372 aaKnown RBP eCLIP18.85■□□□□ 0.61
CCDC40-202ENST00000374876 IL27Q8NEV9 243 aa18.85■□□□□ 0.61
CCDC40-202ENST00000374876 ESYT1Q9BSJ8 1104 aa18.85■□□□□ 0.61
CCDC40-202ENST00000374876 ALDH1L1O75891 902 aa18.84■□□□□ 0.61
CCDC40-202ENST00000374876 MASTLQ96GX5 879 aa18.84■□□□□ 0.61
CCDC40-202ENST00000374876 C9orf78Q9NZ63 289 aaPredicted RBP18.84■□□□□ 0.61
CCDC40-202ENST00000374876 COL11A2P13942 1736 aaPredicted RBP18.84■□□□□ 0.61
CCDC40-202ENST00000374876 CRY2Q49AN0 593 aa18.84■□□□□ 0.61
CCDC40-202ENST00000374876 L1TD1Q5T7N2 865 aaKnown RBP18.84■□□□□ 0.61
CCDC40-202ENST00000374876 GZF1Q9H116 711 aaPredicted RBP18.84■□□□□ 0.61
CCDC40-202ENST00000374876 CHMLP26374 656 aa18.83■□□□□ 0.61
CCDC40-202ENST00000374876 TTLL6Q8N841 843 aa18.83■□□□□ 0.61
CCDC40-202ENST00000374876 RHPN1Q8TCX5 695 aa18.83■□□□□ 0.61
CCDC40-202ENST00000374876 KIF1BPQ96EK5 621 aa18.83■□□□□ 0.61
CCDC40-202ENST00000374876 CCDC85AQ96PX6 553 aaPredicted RBP18.83■□□□□ 0.61
CCDC40-202ENST00000374876 NPR1P16066 1061 aa18.83■□□□□ 0.6
CCDC40-202ENST00000374876 CASP7P55210 303 aa18.83■□□□□ 0.6
CCDC40-202ENST00000374876 HSP90AB4PQ58FF6 505 aa18.83■□□□□ 0.6
CCDC40-202ENST00000374876 DALRD3Q5D0E6 543 aaKnown RBP18.83■□□□□ 0.6
CCDC40-202ENST00000374876 RPGRQ92834 1020 aaKnown RBP18.83■□□□□ 0.6
CCDC40-202ENST00000374876 ZNF219Q9P2Y4 722 aaPredicted RBP18.83■□□□□ 0.6
CCDC40-202ENST00000374876 DDX60Q8IY21 1712 aaKnown RBP18.82■□□□□ 0.6
CCDC40-202ENST00000374876 GRM8O00222 908 aa18.82■□□□□ 0.6
CCDC40-202ENST00000374876 PTMSP20962 102 aa18.82■□□□□ 0.6
CCDC40-202ENST00000374876 MCCP23508 829 aa18.82■□□□□ 0.6
CCDC40-202ENST00000374876 STYK1Q6J9G0 422 aa18.82■□□□□ 0.6
CCDC40-202ENST00000374876 CDHR2Q9BYE9 1310 aa18.82■□□□□ 0.6
CCDC40-202ENST00000374876 PDE8AO60658 829 aa18.81■□□□□ 0.6
CCDC40-202ENST00000374876 RIC1Q4ADV7 1423 aa18.81■□□□□ 0.6
CCDC40-202ENST00000374876 HDAC5Q9UQL6 1122 aa18.81■□□□□ 0.6
CCDC40-202ENST00000374876 BRCA1P38398 1863 aaKnown RBP18.8■□□□□ 0.6
CCDC40-202ENST00000374876 CNKSR1Q969H4 720 aa18.8■□□□□ 0.6
CCDC40-202ENST00000374876 RBM17Q96I25 401 aaKnown RBP18.8■□□□□ 0.6
CCDC40-202ENST00000374876 ANO2Q9NQ90 1003 aa18.8■□□□□ 0.6
CCDC40-202ENST00000374876 LAMB2P55268 1798 aa18.8■□□□□ 0.6
CCDC40-202ENST00000374876 GOLGA6L3A6NEY3 463 aa18.79■□□□□ 0.6
CCDC40-202ENST00000374876 HOXA10P31260 410 aaPredicted RBP18.79■□□□□ 0.6
CCDC40-202ENST00000374876 OS9Q13438 667 aaPredicted RBP18.79■□□□□ 0.6
CCDC40-202ENST00000374876 SF3B3Q15393 1217 aaKnown RBP18.79■□□□□ 0.6
CCDC40-202ENST00000374876 DLEC1Q9Y238 1755 aa18.79■□□□□ 0.6
CCDC40-202ENST00000374876 DCAF8L1A6NGE4 600 aa18.79■□□□□ 0.6
CCDC40-202ENST00000374876 ALDH1B1P30837 517 aa18.79■□□□□ 0.6
CCDC40-202ENST00000374876 PRPF40BQ6NWY9 871 aaKnown RBP18.79■□□□□ 0.6
CCDC40-202ENST00000374876 C21orf2O43822 256 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 HSP90B1P14625 803 aaKnown RBP18.78■□□□□ 0.6
CCDC40-202ENST00000374876 NUCB2P80303 420 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 MTX1Q13505 466 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 EPHA10Q5JZY3 1008 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 DDX46Q7L014 1031 aaKnown RBP18.78■□□□□ 0.6
CCDC40-202ENST00000374876 SLC51AQ86UW1 340 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 TTLL11Q8NHH1 800 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 CWC22Q9HCG8 908 aaKnown RBP18.78■□□□□ 0.6
CCDC40-202ENST00000374876 SEC31BQ9NQW1 1179 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 CACNA1SQ13698 1873 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 SLX4Q8IY92 1834 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 GOLGA6L22H0YM25 854 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 CTSWP56202 376 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 SKOR2Q2VWA4 1001 aaPredicted RBP18.78■□□□□ 0.6
CCDC40-202ENST00000374876 OLFM4Q6UX06 510 aa18.78■□□□□ 0.6
CCDC40-202ENST00000374876 TAF1P21675 1872 aa18.77■□□□□ 0.6
CCDC40-202ENST00000374876 PI4K2BQ8TCG2 481 aa18.77■□□□□ 0.6
CCDC40-202ENST00000374876 SUCLG2Q96I99 432 aa18.77■□□□□ 0.6
CCDC40-202ENST00000374876 CRAMP1Q96RY5 1269 aa18.77■□□□□ 0.6
CCDC40-202ENST00000374876 UTYO14607 1347 aa18.76■□□□□ 0.59
CCDC40-202ENST00000374876 NEK4P51957 841 aa18.76■□□□□ 0.59
CCDC40-202ENST00000374876 ANAPC15P60006 121 aa18.76■□□□□ 0.59
CCDC40-202ENST00000374876 FOXO4P98177 505 aa18.76■□□□□ 0.59
CCDC40-202ENST00000374876 KAZALD1Q96I82 304 aa18.76■□□□□ 0.59
CCDC40-202ENST00000374876 PLA2G12BQ9BX93 195 aa18.76■□□□□ 0.59
CCDC40-202ENST00000374876 CCDC152Q4G0S7 254 aa18.76■□□□□ 0.59
CCDC40-202ENST00000374876 CLEC17AQ6ZS10 378 aa18.76■□□□□ 0.59
CCDC40-202ENST00000374876 CELF1Q92879 486 aaKnown RBP18.76■□□□□ 0.59
CCDC40-202ENST00000374876 GREM2Q9H772 168 aa18.76■□□□□ 0.59
CCDC40-202ENST00000374876 FSD2A1L4K1 749 aa18.75■□□□□ 0.59
CCDC40-202ENST00000374876 MAP4K4O95819 1239 aaPredicted RBP18.75■□□□□ 0.59
CCDC40-202ENST00000374876 MCM2P49736 904 aa18.75■□□□□ 0.59
CCDC40-202ENST00000374876 LMBR1LQ6UX01 489 aa18.74■□□□□ 0.59
CCDC40-202ENST00000374876 ARHGAP27Q6ZUM4 889 aa18.74■□□□□ 0.59
CCDC40-202ENST00000374876 CNTROBQ8N137 903 aa18.74■□□□□ 0.59
CCDC40-202ENST00000374876 CHMP3Q9Y3E7 222 aa18.74■□□□□ 0.59
CCDC40-202ENST00000374876 EPB41L2O43491 1005 aaKnown RBP18.74■□□□□ 0.59
CCDC40-202ENST00000374876 GRIN3BO60391 1043 aa18.74■□□□□ 0.59
CCDC40-202ENST00000374876 CSF1RP07333 972 aa18.74■□□□□ 0.59
CCDC40-202ENST00000374876 GRAPQ13588 217 aa18.74■□□□□ 0.59
CCDC40-202ENST00000374876 CLASRPQ8N2M8 674 aaKnown RBP18.74■□□□□ 0.59
CCDC40-202ENST00000374876 GRAPLQ8TC17 118 aaPredicted RBP18.74■□□□□ 0.59
CCDC40-202ENST00000374876 C7orf43Q8WVR3 580 aa18.74■□□□□ 0.59
CCDC40-202ENST00000374876 COL4A1P02462 1669 aa18.73■□□□□ 0.59
CCDC40-202ENST00000374876 BAG4O95429 457 aaKnown RBP18.73■□□□□ 0.59
CCDC40-202ENST00000374876 ERC1Q8IUD2 1116 aa18.73■□□□□ 0.59
CCDC40-202ENST00000374876 BICC1Q9H694 974 aaKnown RBP18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms