RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 RANBP6O60518 1105 aaKnown RBP10.52□□□□□ -0.72
VPS13A-203ENST00000360280 GIGYF1O75420 1035 aaPredicted RBP10.52□□□□□ -0.72
VPS13A-203ENST00000360280 MGEA5O60502 916 aa10.52□□□□□ -0.72
VPS13A-203ENST00000360280 STARD3NLO95772 234 aa10.52□□□□□ -0.72
VPS13A-203ENST00000360280 METAP2P50579 478 aaKnown RBP eCLIP10.52□□□□□ -0.72
VPS13A-203ENST00000360280 AFAP1L1Q8TED9 768 aa10.52□□□□□ -0.72
VPS13A-203ENST00000360280 CCDC141Q6ZP82 1450 aa10.52□□□□□ -0.72
VPS13A-203ENST00000360280 ANKIB1Q9P2G1 1089 aa10.52□□□□□ -0.72
VPS13A-203ENST00000360280 HVCN1Q96D96 273 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 CRCPO75575 148 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 BICDL1Q6ZP65 573 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 NCOA2Q15596 1464 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 IFIT3O14879 490 aaKnown RBP10.52□□□□□ -0.73
VPS13A-203ENST00000360280 RASSF2P50749 326 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 CHMP4BP1P59074 171 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 ANKRD24Q8TF21 1146 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 PHF23Q9BUL5 403 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-203ENST00000360280 TSPYL2Q9H2G4 693 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-203ENST00000360280 NBPF7P0C2Y1 421 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-203ENST00000360280 SULT6B1Q6IMI4 303 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 SDCCAG8Q86SQ7 713 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-203ENST00000360280 IL1RAPL2Q9NP60 686 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 BICDL2A1A5D9 508 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 PSMA7O14818 248 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 ERCC3P19447 782 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 KRBA2Q6ZNG9 492 aa10.52□□□□□ -0.73
VPS13A-203ENST00000360280 ABCC11Q96J66 1382 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 PDE1CQ14123 709 aaPredicted RBP10.51□□□□□ -0.73
VPS13A-203ENST00000360280 EXOC6BQ9Y2D4 811 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 CCDC38Q502W7 563 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 MAP3K21Q5TCX8 1036 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 KCNK9Q9NPC2 374 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 PFDN4Q9NQP4 134 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 EVI5LQ96CN4 794 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 WDR97A6NE52 1622 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 SLC5A1P13866 664 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 SSFA2P28290 1259 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 ALDH1L2Q3SY69 923 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 TMEM57Q8N5G2 664 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 IFT81Q8WYA0 676 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 BCAP29Q9UHQ4 241 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 HCLS1P14317 486 aaPredicted RBP10.51□□□□□ -0.73
VPS13A-203ENST00000360280 SMAP1Q8IYB5 467 aaPredicted RBP10.51□□□□□ -0.73
VPS13A-203ENST00000360280 CCT6BQ92526 530 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 ACTN4O43707 911 aaKnown RBP10.51□□□□□ -0.73
VPS13A-203ENST00000360280 FAM169AQ9Y6X4 670 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 RTL1A6NKG5 1358 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 PHACTR2O75167 634 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 CETN3O15182 167 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 WHAMMQ8TF30 809 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 GNAT3A8MTJ3 354 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 CROCCP2Q86T23 111 aa10.51□□□□□ -0.73
VPS13A-203ENST00000360280 GUCY1B3Q02153 619 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 CCDC26Q8TAB7 109 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 PLCB3Q01970 1234 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 RNF10Q8N5U6 811 aaKnown RBP10.5□□□□□ -0.73
VPS13A-203ENST00000360280 TTC16Q8NEE8 873 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 TOM1L2Q6ZVM7 507 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 DDX27Q96GQ7 796 aaKnown RBP10.5□□□□□ -0.73
VPS13A-203ENST00000360280 EEF2P13639 858 aaKnown RBP10.5□□□□□ -0.73
VPS13A-203ENST00000360280 TMEM67Q5HYA8 995 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 KAT14Q9H8E8 782 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 INPP5BP32019 993 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 NUTM1Q86Y26 1132 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 ZKSCAN5Q9Y2L8 839 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 HSPA1LP34931 641 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.5□□□□□ -0.73
VPS13A-203ENST00000360280 MAK16Q9BXY0 300 aaKnown RBP10.5□□□□□ -0.73
VPS13A-203ENST00000360280 MMRN2Q9H8L6 949 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 SEL1L2Q5TEA6 688 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 RAB11FIP4Q86YS3 637 aa10.5□□□□□ -0.73
VPS13A-203ENST00000360280 ESCO1Q5FWF5 840 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 CCDC82Q8N4S0 544 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 CNGA4Q8IV77 575 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 ARHGEF2Q92974 986 aaKnown RBP10.49□□□□□ -0.73
VPS13A-203ENST00000360280 CCDC25Q86WR0 208 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 IFIT5Q13325 482 aaKnown RBP10.49□□□□□ -0.73
VPS13A-203ENST00000360280 ATAD2Q6PL18 1390 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 TRAF1Q13077 416 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 PTPRGP23470 1445 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 EPRSP07814 1512 aaKnown RBP10.49□□□□□ -0.73
VPS13A-203ENST00000360280 PTGS1P23219 599 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 CCDC42Q96M95 316 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 GIPC1O14908 333 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 MFSD6Q6ZSS7 791 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 UTP11Q9Y3A2 253 aaKnown RBP10.49□□□□□ -0.73
VPS13A-203ENST00000360280 NDUFAB1O14561 156 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 CCT2P78371 535 aaKnown RBP10.49□□□□□ -0.73
VPS13A-203ENST00000360280 RSPH3Q86UC2 560 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 NEK11Q8NG66 645 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 HAUS2Q9NVX0 235 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 GUCA1BQ9UMX6 200 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 ZSCAN22P10073 491 aaPredicted RBP10.49□□□□□ -0.73
VPS13A-203ENST00000360280 MICU3Q86XE3 530 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 MRVI1Q9Y6F6 885 aa10.49□□□□□ -0.73
VPS13A-203ENST00000360280 RRAGBQ5VZM2 374 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 PLCB1Q9NQ66 1216 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 CAMSAP2Q08AD1 1489 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 MIER3Q7Z3K6 550 aa10.48□□□□□ -0.73
VPS13A-203ENST00000360280 ISM2Q6H9L7 571 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms