RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.93■□□□□ 0.3
CHD4-201ENST00000357008 ASXL1Q8IXJ9 1541 aa16.93■□□□□ 0.3
CHD4-201ENST00000357008 AEBP2Q6ZN18 517 aaPredicted RBP16.92■□□□□ 0.3
CHD4-201ENST00000357008 FBF1Q8TES7 1133 aa16.92■□□□□ 0.3
CHD4-201ENST00000357008 DCTPP1Q9H773 170 aa16.92■□□□□ 0.3
CHD4-201ENST00000357008 NUTM2BA6NNL0 878 aaPredicted RBP16.92■□□□□ 0.3
CHD4-201ENST00000357008 NUTM2EB1AL46 878 aaPredicted RBP16.92■□□□□ 0.3
CHD4-201ENST00000357008 KRT86O43790 486 aa16.92■□□□□ 0.3
CHD4-201ENST00000357008 NUTM2AQ8IVF1 878 aaPredicted RBP16.92■□□□□ 0.3
CHD4-201ENST00000357008 IQGAP2Q13576 1575 aa16.92■□□□□ 0.3
CHD4-201ENST00000357008 NOS1P29475 1434 aa16.92■□□□□ 0.3
CHD4-201ENST00000357008 ATP2C2O75185 946 aa16.92■□□□□ 0.3
CHD4-201ENST00000357008 ALDH1L1O75891 902 aa16.92■□□□□ 0.3
CHD4-201ENST00000357008 MARCKSP29966 332 aaPredicted RBP16.92■□□□□ 0.3
CHD4-201ENST00000357008 C16orf71Q8IYS4 520 aaPredicted RBP16.91■□□□□ 0.3
CHD4-201ENST00000357008 PARD3Q8TEW0 1356 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 RTN1Q16799 776 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 SYCP3Q8IZU3 236 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 CDC5LQ99459 802 aaKnown RBP16.91■□□□□ 0.3
CHD4-201ENST00000357008 BAG3O95817 575 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 ANKRD13DQ6ZTN6 518 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 EBAG9O00559 213 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 GPTP24298 496 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 AK2P54819 239 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 KIF5AQ12840 1032 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 VAT1LQ9HCJ6 419 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 NESP48681 1621 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 TTC41PQ6P2S7 1318 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 PPM1EQ8WY54 764 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 DNMBPQ6XZF7 1577 aa16.91■□□□□ 0.3
CHD4-201ENST00000357008 IFNL2Q8IZJ0 200 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 TBC1D5Q92609 795 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 ZGPATQ8N5A5 531 aaKnown RBP16.9■□□□□ 0.3
CHD4-201ENST00000357008 IKBKGQ9Y6K9 419 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 TBCAO75347 108 aaKnown RBP16.9■□□□□ 0.3
CHD4-201ENST00000357008 SNRPA1P09661 255 aaKnown RBP16.9■□□□□ 0.3
CHD4-201ENST00000357008 PRPHP41219 470 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 DRC1Q96MC2 740 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 RASAL2Q9UJF2 1139 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 ESR2Q92731 530 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 KIF14Q15058 1648 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 A0A1W2PRG0 241 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 ACTN2P35609 894 aa16.9■□□□□ 0.3
CHD4-201ENST00000357008 STMN4Q9H169 189 aaPredicted RBP16.9■□□□□ 0.3
CHD4-201ENST00000357008 SYT10Q6XYQ8 523 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 NBPF11Q86T75 865 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 IDI1Q13907 227 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 SCLT1Q96NL6 688 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 MICALL1Q8N3F8 863 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 ANKS4BQ8N8V4 417 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 C8orf58Q8NAV2 365 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 CCDC77Q9BR77 488 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 ERMNQ8TAM6 284 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 FERMT2Q96AC1 680 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 IFNKQ9P0W0 207 aa16.89■□□□□ 0.29
CHD4-201ENST00000357008 CRNKL1Q9BZJ0 848 aaKnown RBP16.88■□□□□ 0.29
CHD4-201ENST00000357008 VPS18Q9P253 973 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 TRIM75PA6NK02 468 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 NMIQ13287 307 aaPredicted RBP16.88■□□□□ 0.29
CHD4-201ENST00000357008 ZBTB40Q9NUA8 1239 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 POLR3AO14802 1390 aaPredicted RBP16.88■□□□□ 0.29
CHD4-201ENST00000357008 KIF4AO95239 1232 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 ANXA1P04083 346 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 MSL1Q68DK7 614 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 LMBR1Q8WVP7 490 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 CHPF2Q9P2E5 772 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 AMOTL2Q9Y2J4 779 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 ARFGAP2Q8N6H7 521 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 CCDC42Q96M95 316 aa16.88■□□□□ 0.29
CHD4-201ENST00000357008 IFIT1BQ5T764 474 aaKnown RBP16.87■□□□□ 0.29
CHD4-201ENST00000357008 USP26Q9BXU7 913 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 PPP1R1BQ9UD71 204 aaPredicted RBP16.87■□□□□ 0.29
CHD4-201ENST00000357008 GRM8O00222 908 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 GNAQP50148 359 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 CCDC121Q6ZUS5 278 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 ABCA10Q8WWZ4 1543 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 CCDC6Q16204 474 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 ATL3Q6DD88 541 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 CEP85Q6P2H3 762 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 CCDC129Q6ZRS4 1044 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 BRAPQ7Z569 592 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 SPATA24Q86W54 205 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 PLEKHM2Q8IWE5 1019 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 OTUD6BQ8N6M0 293 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 RLBP1P12271 317 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 CCDC174Q6PII3 467 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 DHX58Q96C10 678 aa16.87■□□□□ 0.29
CHD4-201ENST00000357008 SMAP1Q8IYB5 467 aaPredicted RBP16.86■□□□□ 0.29
CHD4-201ENST00000357008 PPP1R14CQ8TAE6 165 aa16.86■□□□□ 0.29
CHD4-201ENST00000357008 ERO1AQ96HE7 468 aa16.86■□□□□ 0.29
CHD4-201ENST00000357008 ZNF569Q5MCW4 686 aa16.86■□□□□ 0.29
CHD4-201ENST00000357008 SEC24BO95487 1268 aa16.86■□□□□ 0.29
CHD4-201ENST00000357008 ASIC1P78348 528 aa16.86■□□□□ 0.29
CHD4-201ENST00000357008 CREB3L3Q68CJ9 461 aa16.86■□□□□ 0.29
CHD4-201ENST00000357008 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.86■□□□□ 0.29
CHD4-201ENST00000357008 IL15P40933 162 aaPredicted RBP16.86■□□□□ 0.29
CHD4-201ENST00000357008 TTC14Q96N46 770 aa16.86■□□□□ 0.29
CHD4-201ENST00000357008 MMRN2Q9H8L6 949 aa16.86■□□□□ 0.29
CHD4-201ENST00000357008 KARSQ15046 597 aaKnown RBP16.86■□□□□ 0.29
CHD4-201ENST00000357008 FERMT1Q9BQL6 677 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 139 ms