RNA–Protein interactions for RNA: ENST00000350034.4

TRIM55-203, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,177 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-203ENST00000350034 UTRNP46939 3433 aa8.35□□□□□ -1.07
TRIM55-203ENST00000350034 ABCC12Q96J65 1359 aa8.35□□□□□ -1.07
TRIM55-203ENST00000350034 SH3TC1Q8TE82 1336 aa8.34□□□□□ -1.07
TRIM55-203ENST00000350034 TAF5LO75529 589 aa8.34□□□□□ -1.07
TRIM55-203ENST00000350034 NTSR2O95665 410 aa8.34□□□□□ -1.07
TRIM55-203ENST00000350034 PTF1AQ7RTS3 328 aa8.34□□□□□ -1.07
TRIM55-203ENST00000350034 INTS4Q96HW7 963 aaKnown RBP8.34□□□□□ -1.07
TRIM55-203ENST00000350034 ZNF512BQ96KM6 892 aaPredicted RBP8.34□□□□□ -1.07
TRIM55-203ENST00000350034 NEUROD6Q96NK8 337 aa8.34□□□□□ -1.07
TRIM55-203ENST00000350034 RBM8AQ9Y5S9 174 aaKnown RBP8.34□□□□□ -1.07
TRIM55-203ENST00000350034 COL5A3P25940 1745 aaPredicted RBP8.34□□□□□ -1.07
TRIM55-203ENST00000350034 RPS6KA4O75676 772 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 HSP90AA1P07900 732 aaKnown RBP8.33□□□□□ -1.08
TRIM55-203ENST00000350034 HSP90B1P14625 803 aaKnown RBP8.33□□□□□ -1.08
TRIM55-203ENST00000350034 FGFR2P21802 821 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 ADORA1P30542 326 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 TAF7LQ5H9L4 462 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 ZMYM1Q5SVZ6 1142 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 CREB3L3Q68CJ9 461 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 DEFB132Q7Z7B7 95 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 ZNF589Q86UQ0 364 aaPredicted RBP8.33□□□□□ -1.08
TRIM55-203ENST00000350034 TNPO1Q92973 898 aaKnown RBP8.33□□□□□ -1.08
TRIM55-203ENST00000350034 XAGE2Q96GT9 111 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 UPF3BQ9BZI7 483 aaKnown RBP8.33□□□□□ -1.08
TRIM55-203ENST00000350034 QTRT2Q9H974 415 aaKnown RBP8.33□□□□□ -1.08
TRIM55-203ENST00000350034 ZSWIM6Q9HCJ5 1215 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 HELLSQ9NRZ9 838 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 PAG1Q9NWQ8 432 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 MYH14Q7Z406 1995 aaKnown RBP8.33□□□□□ -1.08
TRIM55-203ENST00000350034 NUP98P52948 1817 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 NHSQ6T4R5 1651 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 RPAP1Q9BWH6 1393 aaPredicted RBP8.33□□□□□ -1.08
TRIM55-203ENST00000350034 AK9Q5TCS8 1911 aa8.33□□□□□ -1.08
TRIM55-203ENST00000350034 SPEF2Q9C093 1822 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 A0A0G2JS52 829 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 SLC27A2O14975 620 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 PDE8BO95263 885 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 IFIT1P09914 478 aaKnown RBP8.32□□□□□ -1.08
TRIM55-203ENST00000350034 SSFA2P28290 1259 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 NUCB2P80303 420 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 ATP2B3Q16720 1220 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 MCMDC2Q4G0Z9 681 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 CCDC158Q5M9N0 1113 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 SLC10A5Q5PT55 438 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 PRPF40BQ6NWY9 871 aaKnown RBP8.32□□□□□ -1.08
TRIM55-203ENST00000350034 LDHAL6AQ6ZMR3 332 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 DDX46Q7L014 1031 aaKnown RBP8.32□□□□□ -1.08
TRIM55-203ENST00000350034 ZGPATQ8N5A5 531 aaKnown RBP8.32□□□□□ -1.08
TRIM55-203ENST00000350034 CCDC85AQ96PX6 553 aaPredicted RBP8.32□□□□□ -1.08
TRIM55-203ENST00000350034 DNAJC2Q99543 621 aaKnown RBP8.32□□□□□ -1.08
TRIM55-203ENST00000350034 ALDH8A1Q9H2A2 487 aaPredicted RBP8.32□□□□□ -1.08
TRIM55-203ENST00000350034 BCL2L12Q9HB09 334 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 FOXD4L1Q9NU39 408 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 HMG20BQ9P0W2 317 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 TRPC5Q9UL62 973 aaPredicted RBP8.32□□□□□ -1.08
TRIM55-203ENST00000350034 NIP7Q9Y221 180 aaKnown RBP eCLIP8.32□□□□□ -1.08
TRIM55-203ENST00000350034 ZNF652Q9Y2D9 606 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 NDUFB9Q9Y6M9 179 aa8.32□□□□□ -1.08
TRIM55-203ENST00000350034 MROH5Q6ZUA9 1318 aa8.31□□□□□ -1.08
TRIM55-203ENST00000350034 BCORQ6W2J9 1755 aa8.31□□□□□ -1.08
TRIM55-203ENST00000350034 GOLIM4O00461 696 aa8.31□□□□□ -1.08
TRIM55-203ENST00000350034 RNF113AO15541 343 aaKnown RBP8.31□□□□□ -1.08
TRIM55-203ENST00000350034 HCLS1P14317 486 aaPredicted RBP8.31□□□□□ -1.08
TRIM55-203ENST00000350034 SF3B3Q15393 1217 aaKnown RBP8.31□□□□□ -1.08
TRIM55-203ENST00000350034 ADCK5Q3MIX3 580 aa8.31□□□□□ -1.08
TRIM55-203ENST00000350034 METTL24Q5JXM2 366 aa8.31□□□□□ -1.08
TRIM55-203ENST00000350034 VPS53Q5VIR6 699 aa8.31□□□□□ -1.08
TRIM55-203ENST00000350034 RUFY3Q7L099 469 aa8.31□□□□□ -1.08
TRIM55-203ENST00000350034 NARFQ9UHQ1 456 aa8.31□□□□□ -1.08
TRIM55-203ENST00000350034 ZDHHC9Q9Y397 364 aa8.31□□□□□ -1.08
TRIM55-203ENST00000350034 U3KPZ7 1027 aaPredicted RBP8.31□□□□□ -1.08
TRIM55-203ENST00000350034 DDX11L8A8MPP1 907 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 CHGBP05060 677 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 ZFYP08048 801 aaPredicted RBP8.3□□□□□ -1.08
TRIM55-203ENST00000350034 ZKSCAN1P17029 563 aaPredicted RBP8.3□□□□□ -1.08
TRIM55-203ENST00000350034 PSMA5P28066 241 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 ARID4AP29374 1257 aaPredicted RBP8.3□□□□□ -1.08
TRIM55-203ENST00000350034 DEKP35659 375 aaKnown RBP8.3□□□□□ -1.08
TRIM55-203ENST00000350034 AK2P54819 239 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 SCARF1Q14162 830 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 CCDC152Q4G0S7 254 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 TTC39AQ5SRH9 613 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 RNF20Q5VTR2 975 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 SEPT12Q8IYM1 358 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 JAKMIP1Q96N16 626 aaKnown RBP8.3□□□□□ -1.08
TRIM55-203ENST00000350034 GBP4Q96PP9 640 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 SEC62Q99442 399 aaKnown RBP8.3□□□□□ -1.08
TRIM55-203ENST00000350034 DSCC1Q9BVC3 393 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 CNNM1Q9NRU3 951 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 LIMCH1Q9UPQ0 1083 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 CHD4Q14839 1912 aa8.3□□□□□ -1.08
TRIM55-203ENST00000350034 UQCRFS1P1P0C7P4 283 aa8.29□□□□□ -1.08
TRIM55-203ENST00000350034 CASTP20810 708 aaKnown RBP8.29□□□□□ -1.08
TRIM55-203ENST00000350034 HOXD11P31277 338 aaPredicted RBP8.29□□□□□ -1.08
TRIM55-203ENST00000350034 ZAP70P43403 619 aa8.29□□□□□ -1.08
TRIM55-203ENST00000350034 KCNQ4P56696 695 aa8.29□□□□□ -1.08
TRIM55-203ENST00000350034 KRT32Q14532 448 aa8.29□□□□□ -1.08
TRIM55-203ENST00000350034 GSE1Q14687 1217 aa8.29□□□□□ -1.08
TRIM55-203ENST00000350034 PUM3Q15397 648 aaKnown RBP8.29□□□□□ -1.08
TRIM55-203ENST00000350034 LRRFIP1Q32MZ4 808 aaKnown RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms