RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 DNAI1Q9UI46 699 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 MACROD2A1Z1Q3 448 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 SSFA2P28290 1259 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 ANO6Q4KMQ2 910 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 VWA3BQ502W6 1294 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 AFAP1L2Q8N4X5 818 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 TSR2Q969E8 191 aaKnown RBP15.08■□□□□ 0
COL6A3-202ENST00000347401 IFIT1P09914 478 aaKnown RBP15.08■□□□□ 0
COL6A3-202ENST00000347401 CABP4P57796 275 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 INTS8Q75QN2 995 aaKnown RBP15.08■□□□□ 0
COL6A3-202ENST00000347401 SLC8A1P32418 973 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 IARSP41252 1262 aaKnown RBP15.08■□□□□ 0
COL6A3-202ENST00000347401 TRIM47Q96LD4 638 aa15.08■□□□□ 0
COL6A3-202ENST00000347401 NESP48681 1621 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 PRPF40BQ6NWY9 871 aaKnown RBP15.07■□□□□ 0
COL6A3-202ENST00000347401 WHAMMP3Q1A5X7 153 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 KRT23Q9C075 422 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 CALML3P27482 149 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 INPP5BP32019 993 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 CABP2Q9NPB3 220 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 SULT6B1Q6IMI4 303 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 NUTM2AQ8IVF1 878 aaPredicted RBP15.07■□□□□ 0
COL6A3-202ENST00000347401 KCNH5Q8NCM2 988 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 RAB3IPQ96QF0 476 aaPredicted RBP15.07■□□□□ 0
COL6A3-202ENST00000347401 VPS18Q9P253 973 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 XRCC6P12956 609 aaKnown RBP eCLIP15.07■□□□□ 0
COL6A3-202ENST00000347401 SUDS3Q9H7L9 328 aaPredicted RBP15.07■□□□□ 0
COL6A3-202ENST00000347401 RAB3GAP1Q15042 981 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 NCOA7Q8NI08 942 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 SPAG5Q96R06 1193 aa15.07■□□□□ 0
COL6A3-202ENST00000347401 IGF1RP08069 1367 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 SMC5Q8IY18 1101 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.06■□□□□ 0
COL6A3-202ENST00000347401 TTC22Q5TAA0 569 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 ZNF365Q70YC5 407 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 IFT20Q8IY31 132 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 NUCB1Q02818 461 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 MYRIPQ8NFW9 859 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 THEGQ9P2T0 379 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 SOS1Q07889 1333 aaPredicted RBP15.06■□□□□ 0
COL6A3-202ENST00000347401 RPRD2Q5VT52 1461 aaKnown RBP15.06■□□□□ 0
COL6A3-202ENST00000347401 TTF2Q9UNY4 1162 aaKnown RBP15.06■□□□□ 0
COL6A3-202ENST00000347401 KIF1BO60333 1816 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 MSH5O43196 834 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 PRC1O43663 620 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 CEP120Q8N960 986 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 VCX3AQ9NNX9 186 aa15.06■□□□□ 0
COL6A3-202ENST00000347401 MKNK2Q9HBH9 465 aa15.05■□□□□ 0
COL6A3-202ENST00000347401 ECHDC1Q9NTX5 307 aa15.05■□□□□ 0
COL6A3-202ENST00000347401 TXNDC16Q9P2K2 825 aa15.05■□□□□ 0
COL6A3-202ENST00000347401 MTMR3Q13615 1198 aa15.05■□□□□ 0
COL6A3-202ENST00000347401 DNMBPQ6XZF7 1577 aa15.05■□□□□ 0
COL6A3-202ENST00000347401 RABGAP1Q9Y3P9 1069 aa15.05■□□□□ 0
COL6A3-202ENST00000347401 CCDC42Q96M95 316 aa15.05■□□□□ 0
COL6A3-202ENST00000347401 COMMD10Q9Y6G5 202 aa15.05■□□□□ 0
COL6A3-202ENST00000347401 MYCBPQ99417 103 aaPredicted RBP15.05■□□□□ -0
COL6A3-202ENST00000347401 STAT6P42226 847 aa15.05■□□□□ -0
COL6A3-202ENST00000347401 CCDC62Q6P9F0 684 aa15.05■□□□□ -0
COL6A3-202ENST00000347401 PIK3R4Q99570 1358 aa15.05■□□□□ -0
COL6A3-202ENST00000347401 TYRO3Q06418 890 aa15.05■□□□□ -0
COL6A3-202ENST00000347401 MPNDQ8N594 471 aa15.05■□□□□ -0
COL6A3-202ENST00000347401 SIL1Q9H173 461 aa15.05■□□□□ -0
COL6A3-202ENST00000347401 SLC5A1P13866 664 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 PCK1P35558 622 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 CALCOCO2Q13137 446 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 METAP2P50579 478 aaKnown RBP eCLIP15.04■□□□□ -0
COL6A3-202ENST00000347401 SPTY2D1Q68D10 685 aaPredicted RBP15.04■□□□□ -0
COL6A3-202ENST00000347401 ZNF530Q6P9A1 599 aaPredicted RBP15.04■□□□□ -0
COL6A3-202ENST00000347401 STK24Q9Y6E0 443 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 TBCAO75347 108 aaKnown RBP15.04■□□□□ -0
COL6A3-202ENST00000347401 LARSQ9P2J5 1176 aaKnown RBP15.04■□□□□ -0
COL6A3-202ENST00000347401 RTL1A6NKG5 1358 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 SEPT14Q6ZU15 432 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 FERMT3Q86UX7 667 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 HOXA7P31268 230 aaPredicted RBP15.04■□□□□ -0
COL6A3-202ENST00000347401 MAP2K2P36507 400 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 CFAP157Q5JU67 520 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 ODF2LQ9ULJ1 636 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 MTMR7Q9Y216 660 aa15.04■□□□□ -0
COL6A3-202ENST00000347401 KDM4AO75164 1064 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 NLRP5P59047 1200 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 GAS8O95995 478 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 NEDD9Q14511 834 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 NEK1Q96PY6 1258 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 SCAF11Q99590 1463 aaKnown RBP15.03■□□□□ -0
COL6A3-202ENST00000347401 IDH1O75874 414 aaKnown RBP15.03■□□□□ -0
COL6A3-202ENST00000347401 SYCP3Q8IZU3 236 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 SMC1BQ8NDV3 1235 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 FAN1Q9Y2M0 1017 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 HMGXB3Q12766 1538 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 SAMD1Q6SPF0 538 aaPredicted RBP15.03■□□□□ -0
COL6A3-202ENST00000347401 UTP11Q9Y3A2 253 aaKnown RBP15.03■□□□□ -0
COL6A3-202ENST00000347401 NUF2Q9BZD4 464 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 MED4Q9NPJ6 270 aa15.03■□□□□ -0
COL6A3-202ENST00000347401 GOLGA6CA6NDK9 693 aa15.02■□□□□ -0
COL6A3-202ENST00000347401 NDUFAB1O14561 156 aa15.02■□□□□ -0
COL6A3-202ENST00000347401 GOLGA6DP0CG33 693 aa15.02■□□□□ -0
COL6A3-202ENST00000347401 PUS7Q96PZ0 661 aaKnown RBP15.02■□□□□ -0
COL6A3-202ENST00000347401 GOLGA6AQ9NYA3 693 aa15.02■□□□□ -0
COL6A3-202ENST00000347401 Q9H521 79 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms