RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 GLIPR1L2Q4G1C9 344 aa11.34□□□□□ -0.59
ATG4A-202ENST00000345734 NUDT18Q6ZVK8 323 aa11.34□□□□□ -0.59
ATG4A-202ENST00000345734 PLBD2Q8NHP8 589 aa11.34□□□□□ -0.59
ATG4A-202ENST00000345734 RHPN1Q8TCX5 695 aa11.34□□□□□ -0.59
ATG4A-202ENST00000345734 LIMD1Q9UGP4 676 aa11.34□□□□□ -0.59
ATG4A-202ENST00000345734 PA2G4Q9UQ80 394 aaKnown RBP11.34□□□□□ -0.59
ATG4A-202ENST00000345734 EPHA10Q5JZY3 1008 aa11.33□□□□□ -0.6
ATG4A-202ENST00000345734 NUTM1Q86Y26 1132 aa11.33□□□□□ -0.6
ATG4A-202ENST00000345734 DNAJC10Q8IXB1 793 aa11.33□□□□□ -0.6
ATG4A-202ENST00000345734 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.33□□□□□ -0.6
ATG4A-202ENST00000345734 SYTL4Q96C24 671 aaPredicted RBP11.33□□□□□ -0.6
ATG4A-202ENST00000345734 HDAC5Q9UQL6 1122 aa11.33□□□□□ -0.6
ATG4A-202ENST00000345734 BCL9O00512 1426 aa11.33□□□□□ -0.6
ATG4A-202ENST00000345734 LRP6O75581 1613 aa11.33□□□□□ -0.6
ATG4A-202ENST00000345734 DOT1LQ8TEK3 1739 aa11.33□□□□□ -0.6
ATG4A-202ENST00000345734 NWD2Q9ULI1 1742 aa11.33□□□□□ -0.6
ATG4A-202ENST00000345734 PPP4R3BQ5MIZ7 849 aa11.32□□□□□ -0.6
ATG4A-202ENST00000345734 SPATA31A5Q5VU36 1347 aa11.32□□□□□ -0.6
ATG4A-202ENST00000345734 SPATA31A7Q8IWB4 1347 aa11.32□□□□□ -0.6
ATG4A-202ENST00000345734 KIF1BPQ96EK5 621 aa11.32□□□□□ -0.6
ATG4A-202ENST00000345734 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.32□□□□□ -0.6
ATG4A-202ENST00000345734 SLIT2O94813 1529 aa11.32□□□□□ -0.6
ATG4A-202ENST00000345734 DDX11L8A8MPP1 907 aa11.32□□□□□ -0.6
ATG4A-202ENST00000345734 RBM25P49756 843 aaKnown RBP11.32□□□□□ -0.6
ATG4A-202ENST00000345734 OS9Q13438 667 aaPredicted RBP11.32□□□□□ -0.6
ATG4A-202ENST00000345734 SLC4A9Q96Q91 983 aa11.32□□□□□ -0.6
ATG4A-202ENST00000345734 ZBTB3Q9H5J0 574 aa11.32□□□□□ -0.6
ATG4A-202ENST00000345734 STAP2Q9UGK3 403 aa11.32□□□□□ -0.6
ATG4A-202ENST00000345734 CCDC9Q9Y3X0 531 aaKnown RBP11.32□□□□□ -0.6
ATG4A-202ENST00000345734 DDB1Q16531 1140 aa11.31□□□□□ -0.6
ATG4A-202ENST00000345734 UBE3BQ7Z3V4 1068 aa11.31□□□□□ -0.6
ATG4A-202ENST00000345734 CDCA7Q9BWT1 371 aaPredicted RBP11.31□□□□□ -0.6
ATG4A-202ENST00000345734 THRAP3Q9Y2W1 955 aaKnown RBP11.31□□□□□ -0.6
ATG4A-202ENST00000345734 A0A087WZG4 1122 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 PROX2Q3B8N5 592 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 HSP90AB4PQ58FF6 505 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 ZNF330Q9Y3S2 320 aaPredicted RBP11.3□□□□□ -0.6
ATG4A-202ENST00000345734 AK9Q5TCS8 1911 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 TJP1Q07157 1748 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 TRAK2O60296 914 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 CASP7P55210 303 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 BECN1Q14457 450 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 CCDC82Q8N4S0 544 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 MARCH10Q8NA82 808 aaPredicted RBP11.3□□□□□ -0.6
ATG4A-202ENST00000345734 KLHDC4Q8TBB5 520 aa11.3□□□□□ -0.6
ATG4A-202ENST00000345734 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.3□□□□□ -0.6
ATG4A-202ENST00000345734 A0A0G2JS52 829 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 UNC5CLQ8IV45 518 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 ACSBG1Q96GR2 724 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 TEX13AQ9BXU3 409 aaPredicted RBP11.29□□□□□ -0.6
ATG4A-202ENST00000345734 BCL2L12Q9HB09 334 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 SNRKQ9NRH2 765 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 PNMA3Q9UL41 463 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 TRIM6-TRIM34B2RNG4 842 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 STARD3NLO95772 234 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 RTL5Q5HYW3 569 aaPredicted RBP11.29□□□□□ -0.6
ATG4A-202ENST00000345734 PI4K2BQ8TCG2 481 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 SPIRE2Q8WWL2 714 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 RILPL2Q969X0 211 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 C8orf37Q96NL8 207 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 KIF2CQ99661 725 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 SIL1Q9H173 461 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 ZSWIM6Q9HCJ5 1215 aa11.29□□□□□ -0.6
ATG4A-202ENST00000345734 AOX1Q06278 1338 aa11.28□□□□□ -0.6
ATG4A-202ENST00000345734 SASH1O94885 1247 aa11.28□□□□□ -0.6
ATG4A-202ENST00000345734 MAP4K4O95819 1239 aaPredicted RBP11.28□□□□□ -0.6
ATG4A-202ENST00000345734 PTPREP23469 700 aa11.28□□□□□ -0.6
ATG4A-202ENST00000345734 CWC25Q9NXE8 425 aaPredicted RBP11.28□□□□□ -0.6
ATG4A-202ENST00000345734 H7C1W4 665 aa11.27□□□□□ -0.6
ATG4A-202ENST00000345734 CYP19A1P11511 503 aaPredicted RBP11.27□□□□□ -0.6
ATG4A-202ENST00000345734 RFC5P40937 340 aa11.27□□□□□ -0.6
ATG4A-202ENST00000345734 G3BP1Q13283 466 aaKnown RBP eCLIP11.27□□□□□ -0.6
ATG4A-202ENST00000345734 CASC1Q6TDU7 716 aa11.27□□□□□ -0.6
ATG4A-202ENST00000345734 ERC1Q8IUD2 1116 aa11.27□□□□□ -0.6
ATG4A-202ENST00000345734 NGLY1Q96IV0 654 aa11.27□□□□□ -0.6
ATG4A-202ENST00000345734 USP26Q9BXU7 913 aa11.27□□□□□ -0.6
ATG4A-202ENST00000345734 SCUBE2Q9NQ36 999 aa11.27□□□□□ -0.6
ATG4A-202ENST00000345734 JCADQ9P266 1359 aa11.27□□□□□ -0.6
ATG4A-202ENST00000345734 RFX5P48382 616 aaPredicted RBP11.27□□□□□ -0.61
ATG4A-202ENST00000345734 RABL6Q3YEC7 729 aaPredicted RBP11.27□□□□□ -0.61
ATG4A-202ENST00000345734 CLASRPQ8N2M8 674 aaKnown RBP11.27□□□□□ -0.61
ATG4A-202ENST00000345734 COL15A1P39059 1388 aa11.27□□□□□ -0.61
ATG4A-202ENST00000345734 BCL9LQ86UU0 1499 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.26□□□□□ -0.61
ATG4A-202ENST00000345734 A6NJR5 290 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 FOXO4P98177 505 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 FAM98CQ17RN3 349 aaKnown RBP11.26□□□□□ -0.61
ATG4A-202ENST00000345734 KCNK17Q96T54 332 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 ZBTB1Q9Y2K1 713 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 PPP1R3GB7ZBB8 358 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 ERC2O15083 957 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 PTPN12Q05209 780 aaKnown RBP11.26□□□□□ -0.61
ATG4A-202ENST00000345734 KIF6Q6ZMV9 814 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 AACSQ86V21 672 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 CCDC191Q8NCU4 936 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 ISCA1Q9BUE6 129 aa11.26□□□□□ -0.61
ATG4A-202ENST00000345734 USP42Q9H9J4 1324 aaKnown RBP11.25□□□□□ -0.61
ATG4A-202ENST00000345734 IFIT2P09913 472 aaKnown RBP11.25□□□□□ -0.61
ATG4A-202ENST00000345734 CD46P15529 392 aa11.25□□□□□ -0.61
ATG4A-202ENST00000345734 NDUFV2P19404 249 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms