RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 NAT10Q9H0A0 1025 aaKnown RBP11.3□□□□□ -0.6
HOXA1-201ENST00000343060 CHPF2Q9P2E5 772 aa11.3□□□□□ -0.6
HOXA1-201ENST00000343060 HDAC5Q9UQL6 1122 aa11.3□□□□□ -0.6
HOXA1-201ENST00000343060 LMO7Q8WWI1 1683 aa11.3□□□□□ -0.6
HOXA1-201ENST00000343060 UTYO14607 1347 aa11.3□□□□□ -0.6
HOXA1-201ENST00000343060 NUTM2FA1L443 756 aa11.3□□□□□ -0.6
HOXA1-201ENST00000343060 KINO60870 393 aaKnown RBP11.3□□□□□ -0.6
HOXA1-201ENST00000343060 AMPHP49418 695 aa11.3□□□□□ -0.6
HOXA1-201ENST00000343060 STK3Q13188 491 aa11.3□□□□□ -0.6
HOXA1-201ENST00000343060 NUTM2GQ5VZR2 741 aa11.3□□□□□ -0.6
HOXA1-201ENST00000343060 ARMCX5Q6P1M9 558 aa11.3□□□□□ -0.6
HOXA1-201ENST00000343060 ZNF589Q86UQ0 364 aaPredicted RBP11.3□□□□□ -0.6
HOXA1-201ENST00000343060 H3BQV1 296 aa11.29□□□□□ -0.6
HOXA1-201ENST00000343060 SASH1O94885 1247 aa11.29□□□□□ -0.6
HOXA1-201ENST00000343060 IFFO2Q5TF58 517 aa11.29□□□□□ -0.6
HOXA1-201ENST00000343060 EAF2Q96CJ1 260 aaPredicted RBP11.29□□□□□ -0.6
HOXA1-201ENST00000343060 ORC3Q9UBD5 711 aaPredicted RBP11.29□□□□□ -0.6
HOXA1-201ENST00000343060 PA2G4Q9UQ80 394 aaKnown RBP11.29□□□□□ -0.6
HOXA1-201ENST00000343060 COL15A1P39059 1388 aa11.29□□□□□ -0.6
HOXA1-201ENST00000343060 PFKFB2O60825 505 aa11.29□□□□□ -0.6
HOXA1-201ENST00000343060 SYT10Q6XYQ8 523 aa11.29□□□□□ -0.6
HOXA1-201ENST00000343060 SRRTQ9BXP5 876 aaKnown RBP11.29□□□□□ -0.6
HOXA1-201ENST00000343060 LAMA4Q16363 1823 aa11.29□□□□□ -0.6
HOXA1-201ENST00000343060 UBR1Q8IWV7 1749 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 NEDD4P46934 1319 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 SALL1Q9NSC2 1324 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 SOX12O15370 315 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 CCP110O43303 1012 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 TADA3O75528 432 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 HOXC9P31274 260 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 HNRNPH2P55795 449 aaKnown RBP11.28□□□□□ -0.6
HOXA1-201ENST00000343060 ARHGAP29Q52LW3 1261 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 FMR1NBQ8N0W7 255 aaPredicted RBP11.28□□□□□ -0.6
HOXA1-201ENST00000343060 NSUN7Q8NE18 718 aaKnown RBP11.28□□□□□ -0.6
HOXA1-201ENST00000343060 ZNF396Q96N95 335 aaPredicted RBP11.28□□□□□ -0.6
HOXA1-201ENST00000343060 NEK1Q96PY6 1258 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 FSD1Q9BTV5 496 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 ARGLU1Q9NWB6 273 aaPredicted RBP11.28□□□□□ -0.6
HOXA1-201ENST00000343060 NAP1L2Q9ULW6 460 aaPredicted RBP11.28□□□□□ -0.6
HOXA1-201ENST00000343060 ETF1P62495 437 aaKnown RBP11.28□□□□□ -0.6
HOXA1-201ENST00000343060 SCRN1Q12765 414 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 DDX11Q96FC9 970 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 USP28Q96RU2 1077 aa11.28□□□□□ -0.6
HOXA1-201ENST00000343060 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.28□□□□□ -0.6
HOXA1-201ENST00000343060 A0A1W2PQ27 194 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 A0A1W2PQ64 194 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 A0A1W2PQD8 194 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 SFPQP23246 707 aaKnown RBP eCLIP11.27□□□□□ -0.61
HOXA1-201ENST00000343060 HDGFP51858 240 aaKnown RBP11.27□□□□□ -0.61
HOXA1-201ENST00000343060 TPM4P67936 248 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 Q6ZUG5 572 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 FSIP1Q8NA03 581 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 TPM1P09493 284 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 TEX35Q5T0J7 233 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 TMCO3Q6UWJ1 677 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 TXLNBQ8N3L3 684 aa11.27□□□□□ -0.61
HOXA1-201ENST00000343060 FTOQ9C0B1 505 aaKnown RBP eCLIP11.27□□□□□ -0.61
HOXA1-201ENST00000343060 XPO4Q9C0E2 1151 aaKnown RBP11.27□□□□□ -0.61
HOXA1-201ENST00000343060 BCL11BQ9C0K0 894 aaPredicted RBP11.27□□□□□ -0.61
HOXA1-201ENST00000343060 TLR7Q9NYK1 1049 aaKnown RBP11.27□□□□□ -0.61
HOXA1-201ENST00000343060 U3KPZ7 1027 aaPredicted RBP11.27□□□□□ -0.61
HOXA1-201ENST00000343060 TMEM2Q9UHN6 1383 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 NRDCO43847 1150 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 CTDNEP1O95476 244 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 EIF2S2P20042 333 aaKnown RBP11.26□□□□□ -0.61
HOXA1-201ENST00000343060 CCDC158Q5M9N0 1113 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 TRIM65Q6PJ69 517 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 ILDR1Q86SU0 546 aaPredicted RBP11.26□□□□□ -0.61
HOXA1-201ENST00000343060 MRPS27Q92552 414 aaKnown RBP11.26□□□□□ -0.61
HOXA1-201ENST00000343060 KAZALD1Q96I82 304 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 AGXT2Q9BYV1 514 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 FEZ2Q9UHY8 353 aaPredicted RBP11.26□□□□□ -0.61
HOXA1-201ENST00000343060 DNAI1Q9UI46 699 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 A0A087WWV3 80 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 EFCAB8A8MWE9 144 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 PSME1Q06323 249 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 PDE4CQ08493 712 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 RAD51AP2Q09MP3 1159 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 TMC6Q7Z403 805 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 FCHSD1Q86WN1 690 aa11.26□□□□□ -0.61
HOXA1-201ENST00000343060 NCAPHQ15003 741 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 CCDC8Q9H0W5 538 aaPredicted RBP11.25□□□□□ -0.61
HOXA1-201ENST00000343060 BOLA2Q9H3K6 86 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 TMX1Q9H3N1 280 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 RTEL1Q9NZ71 1219 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 IFNKQ9P0W0 207 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 KIAA1468Q9P260 1216 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 OVOS2A0A0G2JMS6 1433 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 ZNF609O15014 1411 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 HEG1Q9ULI3 1381 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 PLEKHG1Q9ULL1 1385 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 PTPDC1A2A3K4 754 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 CEBPZQ03701 1054 aaKnown RBP11.25□□□□□ -0.61
HOXA1-201ENST00000343060 G3BP1Q13283 466 aaKnown RBP eCLIP11.25□□□□□ -0.61
HOXA1-201ENST00000343060 DPCR1Q3MIW9 517 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 ADALQ6DHV7 355 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 KSR2Q6VAB6 950 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 UBXN4Q92575 508 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 SUCLG2Q96I99 432 aa11.25□□□□□ -0.61
HOXA1-201ENST00000343060 C9orf78Q9NZ63 289 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms