RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CHRNA2Q15822 529 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 CARD14Q9BXL6 1004 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 PHAXQ9H814 394 aaKnown RBP9.93□□□□□ -0.82
RTN3-202ENST00000339997 INCENPQ9NQS7 918 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 CDC42BPAQ5VT25 1732 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 CHMLP26374 656 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 CEBPAP49715 358 aaPredicted RBP9.93□□□□□ -0.82
RTN3-202ENST00000339997 PPP2R3AQ06190 1150 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 LMBR1LQ6UX01 489 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 CERS3Q8IU89 383 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 PSMD1Q99460 953 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 SLC52A1Q9NWF4 448 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 TSPY2A6NKD2 308 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 COPS6Q7L5N1 327 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 A0A087WWV3 80 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 SMC1AQ14683 1233 aaKnown RBP9.92□□□□□ -0.82
RTN3-202ENST00000339997 PTPN21Q16825 1174 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 NCOA7Q8NI08 942 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 DCTPP1Q9H773 170 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 BCL2L12Q9HB09 334 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 PRC1O43663 620 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 ZNF444Q8N0Y2 327 aaPredicted RBP9.92□□□□□ -0.82
RTN3-202ENST00000339997 STAMQ92783 540 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 ALS2CR12Q96Q35 445 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 ZSCAN16Q9H4T2 348 aaPredicted RBP9.92□□□□□ -0.82
RTN3-202ENST00000339997 RTL1A6NKG5 1358 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 CREB3L3Q68CJ9 461 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 SPAG5Q96R06 1193 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 AKAP2Q9Y2D5 859 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 PTPRCP08575 1304 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 NPHP3Q7Z494 1330 aa9.92□□□□□ -0.82
RTN3-202ENST00000339997 PTPDC1A2A3K4 754 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 ZBTB43O43298 467 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 HSF2BPO75031 334 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 PDIA4P13667 645 aaKnown RBP9.91□□□□□ -0.82
RTN3-202ENST00000339997 HPDP32754 393 aaPredicted RBP9.91□□□□□ -0.82
RTN3-202ENST00000339997 GJC1P36383 396 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 MFSD6Q6ZSS7 791 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 CATIPQ7Z7H3 387 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 DZIP1Q86YF9 867 aaKnown RBP9.91□□□□□ -0.82
RTN3-202ENST00000339997 FBF1Q8TES7 1133 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 GTPBP4Q9BZE4 634 aaKnown RBP9.91□□□□□ -0.82
RTN3-202ENST00000339997 TCP11L1Q9NUJ3 509 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 OGFRQ9NZT2 677 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 ANKIB1Q9P2G1 1089 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 XAGE3Q8WTP9 111 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 EBAG9O00559 213 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 LMBRD1Q9NUN5 540 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 BCORL1Q5H9F3 1711 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 CTAGE9A4FU28 777 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 VPS36Q86VN1 386 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 OTUD6BQ8N6M0 293 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 TSG101Q99816 390 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 ABCC5O15440 1437 aa9.91□□□□□ -0.82
RTN3-202ENST00000339997 SLC9C2Q5TAH2 1124 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 MICALCLQ6ZW33 695 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 CEP112Q8N8E3 955 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 GOLGA1Q92805 767 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 ADAMTS12P58397 1594 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 E9PCH4 1651 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 ABCC11Q96J66 1382 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 PPP1R12BO60237 982 aaPredicted RBP9.9□□□□□ -0.82
RTN3-202ENST00000339997 CTNNA2P26232 953 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 IRX3P78415 501 aaPredicted RBP9.9□□□□□ -0.82
RTN3-202ENST00000339997 AKNAD1Q5T1N1 836 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 MIGA1Q8NAN2 632 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 VPS16Q9H269 839 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 HSPA4P34932 840 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 TIMM10P62072 90 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 ATP8B2P98198 1209 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 ANKRD13DQ6ZTN6 518 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 CCDC25Q86WR0 208 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 CBX8Q9HC52 389 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 WWC3Q9ULE0 1092 aa9.9□□□□□ -0.82
RTN3-202ENST00000339997 ZBTB7BO15156 539 aaPredicted RBP9.9□□□□□ -0.83
RTN3-202ENST00000339997 ERCC6LQ2NKX8 1250 aa9.9□□□□□ -0.83
RTN3-202ENST00000339997 AEBP2Q6ZN18 517 aaPredicted RBP9.9□□□□□ -0.83
RTN3-202ENST00000339997 EEF2KMTQ96G04 330 aa9.9□□□□□ -0.83
RTN3-202ENST00000339997 FAM227BQ96M60 508 aa9.9□□□□□ -0.83
RTN3-202ENST00000339997 SELENOSQ9BQE4 189 aa9.9□□□□□ -0.83
RTN3-202ENST00000339997 TROQ12816 1431 aaPredicted RBP9.9□□□□□ -0.83
RTN3-202ENST00000339997 TTC31Q49AM3 519 aaPredicted RBP9.89□□□□□ -0.83
RTN3-202ENST00000339997 CAVIN4Q5BKX8 364 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 CRACR2BQ8N4Y2 399 aaPredicted RBP9.89□□□□□ -0.83
RTN3-202ENST00000339997 KCNG4Q8TDN1 519 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 NAA15Q9BXJ9 866 aaKnown RBP9.89□□□□□ -0.83
RTN3-202ENST00000339997 RASSF4Q9H2L5 321 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 TMEM110-MUSTN1A8MSY1 372 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 JAK2O60674 1132 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 MCM3P25205 808 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 UBXN1Q04323 297 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 EDC3Q96F86 508 aaKnown RBP9.89□□□□□ -0.83
RTN3-202ENST00000339997 GOLGA6L9A6NEM1 432 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 WASLO00401 505 aaPredicted RBP9.89□□□□□ -0.83
RTN3-202ENST00000339997 WDHD1O75717 1129 aaPredicted RBP9.89□□□□□ -0.83
RTN3-202ENST00000339997 CCDC6Q16204 474 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 KIAA0753Q2KHM9 967 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 MYRIPQ8NFW9 859 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 NEK11Q8NG66 645 aa9.89□□□□□ -0.83
RTN3-202ENST00000339997 MRRFQ96E11 262 aaKnown RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms