RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PSMA5P28066 241 aa15.7■□□□□ 0.1
CCDC88C-201ENST00000331194 OAS2P29728 719 aaKnown RBP15.7■□□□□ 0.1
CCDC88C-201ENST00000331194 IL17REQ8NFR9 667 aa15.7■□□□□ 0.1
CCDC88C-201ENST00000331194 TNNT3P45378 269 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-201ENST00000331194 DPCR1Q3MIW9 517 aa15.7■□□□□ 0.1
CCDC88C-201ENST00000331194 EYA1Q99502 592 aa15.7■□□□□ 0.1
CCDC88C-201ENST00000331194 MAP3K5Q99683 1374 aa15.7■□□□□ 0.1
CCDC88C-201ENST00000331194 THEMISQ8N1K5 641 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-201ENST00000331194 FSIP1Q8NA03 581 aa15.7■□□□□ 0.1
CCDC88C-201ENST00000331194 TTC41PQ6P2S7 1318 aa15.69■□□□□ 0.1
CCDC88C-201ENST00000331194 A0A1B0GVL5 298 aa15.69■□□□□ 0.1
CCDC88C-201ENST00000331194 KINO60870 393 aaKnown RBP15.69■□□□□ 0.1
CCDC88C-201ENST00000331194 ANO10Q9NW15 660 aa15.69■□□□□ 0.1
CCDC88C-201ENST00000331194 ARHGEF10O15013 1369 aa15.69■□□□□ 0.1
CCDC88C-201ENST00000331194 ME1P48163 572 aa15.69■□□□□ 0.1
CCDC88C-201ENST00000331194 RNF20Q5VTR2 975 aa15.69■□□□□ 0.1
CCDC88C-201ENST00000331194 EVI5LQ96CN4 794 aa15.69■□□□□ 0.1
CCDC88C-201ENST00000331194 CAVIN2O95810 425 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 SFPQP23246 707 aaKnown RBP eCLIP15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 CCDC73Q6ZRK6 1079 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 CCDC191Q8NCU4 936 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 MNS1Q8NEH6 495 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 TEX35Q5T0J7 233 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 Q6ZUG5 572 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 CEP57L1Q8IYX8 460 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 SDF4Q9BRK5 362 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 FSD1Q9BTV5 496 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 OSBPL5Q9H0X9 879 aaPredicted RBP15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 CFAP45Q9UL16 551 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 NPHP4O75161 1426 aaPredicted RBP15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 TBC1D8O95759 1140 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 ZSCAN26Q16670 478 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 ENGASEQ8NFI3 743 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 EAF2Q96CJ1 260 aaPredicted RBP15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 CHPF2Q9P2E5 772 aa15.68■□□□□ 0.1
CCDC88C-201ENST00000331194 KIF2AO00139 706 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 GSDMDP57764 484 aa15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 ADAMTS13Q76LX8 1427 aa15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 PTPRUQ92729 1446 aa15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 LMOD1P29536 600 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 ETF1P62495 437 aaKnown RBP15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 CCT2P78371 535 aaKnown RBP15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 SCRN1Q12765 414 aa15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 BEND3Q5T5X7 828 aa15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 CCDC129Q6ZRS4 1044 aa15.67■□□□□ 0.1
CCDC88C-201ENST00000331194 ACEP12821 1306 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 CHRM1P11229 460 aaPredicted RBP15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 ATP1A3P13637 1013 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 EVCP57679 992 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 GNL2Q13823 731 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 SMC1AQ14683 1233 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 ANKRD1Q15327 319 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 TRIM65Q6PJ69 517 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 KLHDC4Q8TBB5 520 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 LTV1Q96GA3 475 aaPredicted RBP15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 USP42Q9H9J4 1324 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 MYO1CO00159 1063 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 NGDNQ8NEJ9 315 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 RCOR1Q9UKL0 485 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 TADA3O75528 432 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 TPM4P67936 248 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 REXO1L1PQ8IX06 675 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 UTP14AQ9BVJ6 771 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 NCOA5Q9HCD5 579 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 KCND1Q9NSA2 647 aa15.66■□□□□ 0.1
CCDC88C-201ENST00000331194 SETD1AO15047 1707 aaKnown RBP15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 PEAK1Q9H792 1746 aa15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 GNAT3A8MTJ3 354 aa15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 KCNQ3O43525 872 aa15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 ARGLU1Q9NWB6 273 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 GIGYF1O75420 1035 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 LMAN1P49257 510 aa15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 HSPA2P54652 639 aa15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 FAM193AP78312 1265 aa15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 FAM160A1Q05DH4 1040 aa15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 DNAAF4Q8WXU2 420 aa15.65■□□□□ 0.1
CCDC88C-201ENST00000331194 CTAGE5O15320 804 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 SASH1O94885 1247 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 NDUFA8P51970 172 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 OTUD7BQ6GQQ9 843 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 CREBRFQ8IUR6 639 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 TXLNBQ8N3L3 684 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 DPF2Q92785 391 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 RASSF4Q9H2L5 321 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 ZSWIM4Q9H7M6 989 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 TAOK2Q9UL54 1235 aa15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 PSDA5PKW4 1024 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 CWF19L2Q2TBE0 894 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-201ENST00000331194 HSP90AB4PQ58FF6 505 aa15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 HSP90AA4PQ58FG1 418 aa15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 CC2D1AQ6P1N0 951 aaPredicted RBP15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 LMOD2Q6P5Q4 547 aa15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 USHBP1Q8N6Y0 703 aa15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 GPATCH3Q96I76 525 aa15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 PCDHA7Q9UN72 937 aa15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 CTDNEP1O95476 244 aa15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 AMPHP49418 695 aa15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 ILDR1Q86SU0 546 aaPredicted RBP15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 UBXN6Q9BZV1 441 aa15.63■□□□□ 0.09
CCDC88C-201ENST00000331194 ZSCAN16Q9H4T2 348 aaPredicted RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms