RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 AKAP2Q9Y2D5 859 aa12.27□□□□□ -0.45
HMGB3-201ENST00000325307 TIMM10P62072 90 aa12.26□□□□□ -0.45
HMGB3-201ENST00000325307 BMP2KLQ5H9B9 411 aa12.26□□□□□ -0.45
HMGB3-201ENST00000325307 GORABQ5T7V8 394 aa12.26□□□□□ -0.45
HMGB3-201ENST00000325307 CELF1Q92879 486 aaKnown RBP12.26□□□□□ -0.45
HMGB3-201ENST00000325307 LAMB2P55268 1798 aa12.26□□□□□ -0.45
HMGB3-201ENST00000325307 TRIM6-TRIM34B2RNG4 842 aa12.26□□□□□ -0.45
HMGB3-201ENST00000325307 RPS8P62241 208 aaKnown RBP12.26□□□□□ -0.45
HMGB3-201ENST00000325307 ECHDC1Q9NTX5 307 aa12.26□□□□□ -0.45
HMGB3-201ENST00000325307 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.26□□□□□ -0.45
HMGB3-201ENST00000325307 MROH5Q6ZUA9 1318 aa12.26□□□□□ -0.45
HMGB3-201ENST00000325307 ERC2O15083 957 aa12.25□□□□□ -0.45
HMGB3-201ENST00000325307 R3HDM1Q15032 1099 aaKnown RBP12.25□□□□□ -0.45
HMGB3-201ENST00000325307 STAP2Q9UGK3 403 aa12.25□□□□□ -0.45
HMGB3-201ENST00000325307 SALL3Q9BXA9 1300 aa12.25□□□□□ -0.45
HMGB3-201ENST00000325307 A0A1B0GUL7 405 aa12.25□□□□□ -0.45
HMGB3-201ENST00000325307 GSPT1P15170 499 aaKnown RBP12.25□□□□□ -0.45
HMGB3-201ENST00000325307 DBNDD2Q9BQY9 259 aa12.25□□□□□ -0.45
HMGB3-201ENST00000325307 OSBPL3Q9H4L5 887 aa12.25□□□□□ -0.45
HMGB3-201ENST00000325307 TAF5LO75529 589 aa12.25□□□□□ -0.45
HMGB3-201ENST00000325307 ATP2B3Q16720 1220 aa12.25□□□□□ -0.45
HMGB3-201ENST00000325307 BRIP1Q9BX63 1249 aa12.25□□□□□ -0.45
HMGB3-201ENST00000325307 DBNLQ9UJU6 430 aaKnown RBP12.25□□□□□ -0.45
HMGB3-201ENST00000325307 TTC41PQ6P2S7 1318 aa12.24□□□□□ -0.45
HMGB3-201ENST00000325307 RILPL2Q969X0 211 aa12.24□□□□□ -0.45
HMGB3-201ENST00000325307 RBM17Q96I25 401 aaKnown RBP12.24□□□□□ -0.45
HMGB3-201ENST00000325307 GPR108Q9NPR9 543 aa12.24□□□□□ -0.45
HMGB3-201ENST00000325307 GLRX3O76003 335 aaKnown RBP12.24□□□□□ -0.45
HMGB3-201ENST00000325307 ZBTB7AO95365 584 aa12.24□□□□□ -0.45
HMGB3-201ENST00000325307 MAP4K4O95819 1239 aaPredicted RBP12.24□□□□□ -0.45
HMGB3-201ENST00000325307 SLC16A10Q8TF71 515 aa12.24□□□□□ -0.45
HMGB3-201ENST00000325307 BSDC1Q9NW68 430 aaPredicted RBP12.24□□□□□ -0.45
HMGB3-201ENST00000325307 PDE8BO95263 885 aa12.24□□□□□ -0.45
HMGB3-201ENST00000325307 CHRNDQ07001 517 aa12.24□□□□□ -0.45
HMGB3-201ENST00000325307 AOX1Q06278 1338 aa12.23□□□□□ -0.45
HMGB3-201ENST00000325307 RIC1Q4ADV7 1423 aa12.23□□□□□ -0.45
HMGB3-201ENST00000325307 PDE6BP35913 854 aa12.23□□□□□ -0.45
HMGB3-201ENST00000325307 TNRC6CQ9HCJ0 1690 aaKnown RBP12.23□□□□□ -0.45
HMGB3-201ENST00000325307 SDSP20132 328 aa12.23□□□□□ -0.45
HMGB3-201ENST00000325307 GRAPQ13588 217 aa12.23□□□□□ -0.45
HMGB3-201ENST00000325307 PUM3Q15397 648 aaKnown RBP12.23□□□□□ -0.45
HMGB3-201ENST00000325307 GRAPLQ8TC17 118 aaPredicted RBP12.23□□□□□ -0.45
HMGB3-201ENST00000325307 CRY2Q49AN0 593 aa12.23□□□□□ -0.45
HMGB3-201ENST00000325307 BOLA2Q9H3K6 86 aa12.23□□□□□ -0.45
HMGB3-201ENST00000325307 ZNF609O15014 1411 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 PSDA5PKW4 1024 aaPredicted RBP12.22□□□□□ -0.45
HMGB3-201ENST00000325307 PI4K2BQ8TCG2 481 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 ATF5Q9Y2D1 282 aaPredicted RBP12.22□□□□□ -0.45
HMGB3-201ENST00000325307 SNAP23O00161 211 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 ADORA1P30542 326 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 KCNJ4P48050 445 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 CCDC158Q5M9N0 1113 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 XAGE2Q96GT9 111 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 MINPP1Q9UNW1 487 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 SEC24BO95487 1268 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 SLC5A1P13866 664 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 VGLL2Q8N8G2 317 aa12.22□□□□□ -0.45
HMGB3-201ENST00000325307 IFIT1P09914 478 aaKnown RBP12.21□□□□□ -0.45
HMGB3-201ENST00000325307 TTC39AQ5SRH9 613 aa12.21□□□□□ -0.45
HMGB3-201ENST00000325307 ZNF622Q969S3 477 aaKnown RBP eCLIP12.21□□□□□ -0.453e-7■■■■□ 22
HMGB3-201ENST00000325307 CDC45O75419 566 aa12.21□□□□□ -0.46
HMGB3-201ENST00000325307 C2CD5Q86YS7 1000 aa12.21□□□□□ -0.46
HMGB3-201ENST00000325307 LPIN2Q92539 896 aa12.21□□□□□ -0.46
HMGB3-201ENST00000325307 DNAJC2Q99543 621 aaKnown RBP12.21□□□□□ -0.46
HMGB3-201ENST00000325307 ANKIB1Q9P2G1 1089 aa12.21□□□□□ -0.46
HMGB3-201ENST00000325307 QSER1Q2KHR3 1735 aa12.21□□□□□ -0.46
HMGB3-201ENST00000325307 TAF1P21675 1872 aa12.21□□□□□ -0.46
HMGB3-201ENST00000325307 CASC1Q6TDU7 716 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 CNTROBQ8N137 903 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 SPEF2Q9C093 1822 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 H0YIN7 160 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 NPR1P16066 1061 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 POLD1P28340 1107 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 ILDR2Q71H61 639 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 RTN4Q9NQC3 1192 aaKnown RBP12.2□□□□□ -0.46
HMGB3-201ENST00000325307 LRP5O75197 1615 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 COL4A1P02462 1669 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 SRGNP10124 158 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 ANKRD2Q9GZV1 360 aa12.2□□□□□ -0.46
HMGB3-201ENST00000325307 KLRG2A4D1S0 409 aaPredicted RBP12.19□□□□□ -0.46
HMGB3-201ENST00000325307 ATP5JP18859 108 aa12.19□□□□□ -0.46
HMGB3-201ENST00000325307 HOXA10P31260 410 aaPredicted RBP12.19□□□□□ -0.46
HMGB3-201ENST00000325307 CRAMP1Q96RY5 1269 aa12.19□□□□□ -0.46
HMGB3-201ENST00000325307 MASTLQ96GX5 879 aa12.19□□□□□ -0.46
HMGB3-201ENST00000325307 MTFR1LQ9H019 292 aa12.19□□□□□ -0.46
HMGB3-201ENST00000325307 NDUFB9Q9Y6M9 179 aa12.19□□□□□ -0.46
HMGB3-201ENST00000325307 BBOX1O75936 387 aa12.19□□□□□ -0.46
HMGB3-201ENST00000325307 TBC1D9Q6ZT07 1266 aa12.19□□□□□ -0.46
HMGB3-201ENST00000325307 TMX4Q9H1E5 349 aaPredicted RBP12.18□□□□□ -0.46
HMGB3-201ENST00000325307 PPP1R1BQ9UD71 204 aaPredicted RBP12.18□□□□□ -0.46
HMGB3-201ENST00000325307 CASZ1Q86V15 1759 aa12.18□□□□□ -0.46
HMGB3-201ENST00000325307 PPEF1O14829 653 aaPredicted RBP12.18□□□□□ -0.46
HMGB3-201ENST00000325307 FGFR2P21802 821 aa12.18□□□□□ -0.46
HMGB3-201ENST00000325307 CHRNA5P30532 468 aa12.18□□□□□ -0.46
HMGB3-201ENST00000325307 ALDH1B1P30837 517 aa12.18□□□□□ -0.46
HMGB3-201ENST00000325307 FKBP4Q02790 459 aaKnown RBP eCLIP12.18□□□□□ -0.46
HMGB3-201ENST00000325307 VPS37DQ86XT2 251 aa12.18□□□□□ -0.46
HMGB3-201ENST00000325307 SNRKQ9NRH2 765 aa12.18□□□□□ -0.46
HMGB3-201ENST00000325307 NSFL1CQ9UNZ2 370 aaKnown RBP12.18□□□□□ -0.46
HMGB3-201ENST00000325307 MFAP1P55081 439 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms