RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 LRRC2Q9BYS8 371 aa15.8■□□□□ 0.12
SKA3-202ENST00000314759 CCDC112Q8NEF3 446 aa15.8■□□□□ 0.12
SKA3-202ENST00000314759 BBXQ8WY36 941 aaPredicted RBP15.8■□□□□ 0.12
SKA3-202ENST00000314759 FTOQ9C0B1 505 aaKnown RBP eCLIP15.8■□□□□ 0.12
SKA3-202ENST00000314759 NCAPD2Q15021 1401 aa15.8■□□□□ 0.12
SKA3-202ENST00000314759 NEURL1BA8MQ27 555 aa15.79■□□□□ 0.12
SKA3-202ENST00000314759 GOLGA6L19H0YKK7 550 aa15.79■□□□□ 0.12
SKA3-202ENST00000314759 THEMISQ8N1K5 641 aaPredicted RBP15.79■□□□□ 0.12
SKA3-202ENST00000314759 KIF18AQ8NI77 898 aa15.79■□□□□ 0.12
SKA3-202ENST00000314759 SMARCC2Q8TAQ2 1214 aa15.79■□□□□ 0.12
SKA3-202ENST00000314759 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.79■□□□□ 0.12
SKA3-202ENST00000314759 V9GYY5 206 aaPredicted RBP15.79■□□□□ 0.12
SKA3-202ENST00000314759 USP27XA6NNY8 438 aa15.79■□□□□ 0.12
SKA3-202ENST00000314759 GCKRQ14397 625 aa15.79■□□□□ 0.12
SKA3-202ENST00000314759 KCNH5Q8NCM2 988 aa15.79■□□□□ 0.12
SKA3-202ENST00000314759 MRC1P22897 1456 aa15.79■□□□□ 0.12
SKA3-202ENST00000314759 ZNF609O15014 1411 aa15.78■□□□□ 0.12
SKA3-202ENST00000314759 GOLPH3LQ9H4A5 285 aa15.78■□□□□ 0.12
SKA3-202ENST00000314759 RCOR1Q9UKL0 485 aa15.78■□□□□ 0.12
SKA3-202ENST00000314759 MORC2Q9Y6X9 1032 aaPredicted RBP15.78■□□□□ 0.12
SKA3-202ENST00000314759 U3KPZ7 1027 aaPredicted RBP15.78■□□□□ 0.12
SKA3-202ENST00000314759 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.78■□□□□ 0.12
SKA3-202ENST00000314759 GTF2E1P29083 439 aaPredicted RBP15.78■□□□□ 0.12
SKA3-202ENST00000314759 SNW1Q13573 536 aaKnown RBP15.78■□□□□ 0.12
SKA3-202ENST00000314759 CCAR1Q8IX12 1150 aaKnown RBP15.78■□□□□ 0.12
SKA3-202ENST00000314759 MRFAP1L1Q96HT8 127 aa15.78■□□□□ 0.12
SKA3-202ENST00000314759 RBM6P78332 1123 aaKnown RBP15.78■□□□□ 0.12
SKA3-202ENST00000314759 TFCP2Q12800 502 aa15.78■□□□□ 0.12
SKA3-202ENST00000314759 TNNI3KQ59H18 835 aa15.78■□□□□ 0.12
SKA3-202ENST00000314759 CEP135Q66GS9 1140 aa15.78■□□□□ 0.12
SKA3-202ENST00000314759 STOX1Q6ZVD7 989 aa15.78■□□□□ 0.12
SKA3-202ENST00000314759 FPGT-TNNI3KV9GXZ4 949 aa15.78■□□□□ 0.12
SKA3-202ENST00000314759 OVOS2A0A0G2JMS6 1433 aa15.77■□□□□ 0.12
SKA3-202ENST00000314759 A0A087WWV3 80 aa15.77■□□□□ 0.12
SKA3-202ENST00000314759 PSME1Q06323 249 aa15.77■□□□□ 0.12
SKA3-202ENST00000314759 GABPB1Q06547 395 aaPredicted RBP15.77■□□□□ 0.12
SKA3-202ENST00000314759 STX1AQ16623 288 aa15.77■□□□□ 0.12
SKA3-202ENST00000314759 RBM33Q96EV2 1170 aaKnown RBP15.77■□□□□ 0.12
SKA3-202ENST00000314759 COPRSQ9NQ92 184 aa15.77■□□□□ 0.12
SKA3-202ENST00000314759 PFKFB2O60825 505 aa15.77■□□□□ 0.11
SKA3-202ENST00000314759 CTDNEP1O95476 244 aa15.77■□□□□ 0.11
SKA3-202ENST00000314759 MYL6BP14649 208 aa15.77■□□□□ 0.11
SKA3-202ENST00000314759 FOSBP53539 338 aa15.77■□□□□ 0.11
SKA3-202ENST00000314759 NEXNQ0ZGT2 675 aa15.77■□□□□ 0.11
SKA3-202ENST00000314759 KMT5BQ4FZB7 885 aa15.77■□□□□ 0.11
SKA3-202ENST00000314759 MCMDC2Q4G0Z9 681 aa15.77■□□□□ 0.11
SKA3-202ENST00000314759 NSUN7Q8NE18 718 aaKnown RBP15.77■□□□□ 0.11
SKA3-202ENST00000314759 DNAJC2Q99543 621 aaKnown RBP15.77■□□□□ 0.11
SKA3-202ENST00000314759 TMEM51Q9NW97 253 aa15.77■□□□□ 0.11
SKA3-202ENST00000314759 USP16Q9Y5T5 823 aa15.77■□□□□ 0.11
SKA3-202ENST00000314759 CTAGE5O15320 804 aa15.76■□□□□ 0.11
SKA3-202ENST00000314759 RFX5P48382 616 aaPredicted RBP15.76■□□□□ 0.11
SKA3-202ENST00000314759 PTPN12Q05209 780 aaKnown RBP15.76■□□□□ 0.11
SKA3-202ENST00000314759 MYD88Q99836 296 aa15.76■□□□□ 0.11
SKA3-202ENST00000314759 LLPHQ9BRT6 129 aaKnown RBP15.76■□□□□ 0.11
SKA3-202ENST00000314759 SLC39A6Q13433 755 aa15.76■□□□□ 0.11
SKA3-202ENST00000314759 NAA16Q6N069 864 aaPredicted RBP15.76■□□□□ 0.11
SKA3-202ENST00000314759 DHX40Q8IX18 779 aaKnown RBP15.76■□□□□ 0.11
SKA3-202ENST00000314759 XAGE3Q8WTP9 111 aa15.76■□□□□ 0.11
SKA3-202ENST00000314759 ZNF215Q9UL58 517 aaPredicted RBP15.76■□□□□ 0.11
SKA3-202ENST00000314759 SKILP12757 684 aa15.75■□□□□ 0.11
SKA3-202ENST00000314759 USP28Q96RU2 1077 aa15.75■□□□□ 0.11
SKA3-202ENST00000314759 DBNDD2Q9BQY9 259 aa15.75■□□□□ 0.11
SKA3-202ENST00000314759 NEMFO60524 1076 aa15.75■□□□□ 0.11
SKA3-202ENST00000314759 TERF2Q15554 542 aa15.75■□□□□ 0.11
SKA3-202ENST00000314759 NYAP1Q6ZVC0 841 aa15.75■□□□□ 0.11
SKA3-202ENST00000314759 DDX46Q7L014 1031 aaKnown RBP15.75■□□□□ 0.11
SKA3-202ENST00000314759 COPS6Q7L5N1 327 aa15.75■□□□□ 0.11
SKA3-202ENST00000314759 ENGASEQ8NFI3 743 aa15.75■□□□□ 0.11
SKA3-202ENST00000314759 METTL22Q9BUU2 404 aaPredicted RBP15.75■□□□□ 0.11
SKA3-202ENST00000314759 PTPDC1A2A3K4 754 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 BECN2A8MW95 431 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 GCP02774 474 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 FILIP1Q7Z7B0 1213 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 ARHGEF25Q86VW2 580 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 ANKRD24Q8TF21 1146 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 APOBRQ0VD83 1088 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 ESCO1Q5FWF5 840 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 DHX32Q7L7V1 743 aaKnown RBP15.74■□□□□ 0.11
SKA3-202ENST00000314759 HAUS7Q99871 368 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 ST7Q9NRC1 585 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 CCDC69A6NI79 296 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 PPFIA3O75145 1194 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 CCZ1BP86790 482 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 CCZ1P86791 482 aaPredicted RBP15.74■□□□□ 0.11
SKA3-202ENST00000314759 PTPN14Q15678 1187 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 ZNF790Q6PG37 636 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 CCDC73Q6ZRK6 1079 aa15.74■□□□□ 0.11
SKA3-202ENST00000314759 ERCC4Q92889 916 aaPredicted RBP15.74■□□□□ 0.11
SKA3-202ENST00000314759 CCT2P78371 535 aaKnown RBP15.73■□□□□ 0.11
SKA3-202ENST00000314759 RFX7Q2KHR2 1363 aa15.73■□□□□ 0.11
SKA3-202ENST00000314759 KINO60870 393 aaKnown RBP15.73■□□□□ 0.11
SKA3-202ENST00000314759 FAM160A1Q05DH4 1040 aa15.73■□□□□ 0.11
SKA3-202ENST00000314759 SLFNL1Q499Z3 407 aa15.73■□□□□ 0.11
SKA3-202ENST00000314759 ANO10Q9NW15 660 aa15.73■□□□□ 0.11
SKA3-202ENST00000314759 HMGB1P09429 215 aaKnown RBP15.72■□□□□ 0.11
SKA3-202ENST00000314759 TAF3Q5VWG9 929 aa15.72■□□□□ 0.11
SKA3-202ENST00000314759 ILDR1Q86SU0 546 aaPredicted RBP15.72■□□□□ 0.11
SKA3-202ENST00000314759 NCOA5Q9HCD5 579 aaKnown RBP15.72■□□□□ 0.11
SKA3-202ENST00000314759 TRMT1Q9NXH9 659 aaKnown RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms