RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 CAPN2P17655 700 aa17.54■□□□□ 0.4
HCFC1-201ENST00000310441 IBSPP21815 317 aaPredicted RBP17.54■□□□□ 0.4
HCFC1-201ENST00000310441 SPINK5Q9NQ38 1064 aaPredicted RBP17.54■□□□□ 0.4
HCFC1-201ENST00000310441 CABP1Q9NZU7 370 aa17.54■□□□□ 0.4
HCFC1-201ENST00000310441 PHACTR2O75167 634 aa17.54■□□□□ 0.4
HCFC1-201ENST00000310441 CRNKL1Q9BZJ0 848 aaKnown RBP17.53■□□□□ 0.4
HCFC1-201ENST00000310441 FYB2Q5VWT5 728 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 SERPINA10Q9UK55 444 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 BOLA2Q9H3K6 86 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 TNNC1P63316 161 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 MAK16Q9BXY0 300 aaKnown RBP17.53■□□□□ 0.4
HCFC1-201ENST00000310441 NUTM1Q86Y26 1132 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 TOP2BQ02880 1626 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 CASQ2O14958 399 aaPredicted RBP17.53■□□□□ 0.4
HCFC1-201ENST00000310441 CALML3P27482 149 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 NBPF11Q86T75 865 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 GBP6Q6ZN66 633 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 HDXQ7Z353 690 aa17.53■□□□□ 0.4
HCFC1-201ENST00000310441 SLFN5Q08AF3 891 aa17.52■□□□□ 0.4
HCFC1-201ENST00000310441 DBF4Q9UBU7 674 aaPredicted RBP17.52■□□□□ 0.4
HCFC1-201ENST00000310441 TTLL12Q14166 644 aaPredicted RBP17.52■□□□□ 0.4
HCFC1-201ENST00000310441 ARHGAP24Q8N264 748 aa17.52■□□□□ 0.4
HCFC1-201ENST00000310441 RSPH14Q9UHP6 348 aa17.52■□□□□ 0.4
HCFC1-201ENST00000310441 NCAPD3P42695 1498 aa17.52■□□□□ 0.4
HCFC1-201ENST00000310441 WDR78Q5VTH9 848 aa17.52■□□□□ 0.4
HCFC1-201ENST00000310441 MCM6Q14566 821 aa17.52■□□□□ 0.4
HCFC1-201ENST00000310441 FAM200AQ8TCP9 573 aa17.52■□□□□ 0.4
HCFC1-201ENST00000310441 PPP1R9BQ96SB3 815 aa17.52■□□□□ 0.4
HCFC1-201ENST00000310441 FAM76AQ8TAV0 307 aa17.52■□□□□ 0.39
HCFC1-201ENST00000310441 PPP1R2P41236 205 aa17.52■□□□□ 0.39
HCFC1-201ENST00000310441 CEP57Q86XR8 500 aa17.52■□□□□ 0.39
HCFC1-201ENST00000310441 CEP120Q8N960 986 aa17.52■□□□□ 0.39
HCFC1-201ENST00000310441 SH3BP5O60239 455 aa17.52■□□□□ 0.39
HCFC1-201ENST00000310441 CCDC114Q96M63 670 aa17.52■□□□□ 0.39
HCFC1-201ENST00000310441 EPSTI1Q96J88 318 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 CYB5RLQ6IPT4 315 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 ANKLE2Q86XL3 938 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 ANKRD24Q8TF21 1146 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 RAB3IPQ96QF0 476 aaPredicted RBP17.51■□□□□ 0.39
HCFC1-201ENST00000310441 CCDC94Q9BW85 323 aaPredicted RBP17.51■□□□□ 0.39
HCFC1-201ENST00000310441 NKIRAS1Q9NYS0 192 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 ZNF354CQ86Y25 554 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 CCDC26Q8TAB7 109 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 TSPY2A6NKD2 308 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 CCDC117Q8IWD4 279 aaPredicted RBP17.51■□□□□ 0.39
HCFC1-201ENST00000310441 PHLDB2Q86SQ0 1253 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.51■□□□□ 0.392e-20■■□□□ 12
HCFC1-201ENST00000310441 IRX3P78415 501 aaPredicted RBP17.51■□□□□ 0.39
HCFC1-201ENST00000310441 CFAP70Q5T0N1 1121 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 LMNTD2Q8IXW0 634 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 STMN1P16949 149 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 CCT6BQ92526 530 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 NUF2Q9BZD4 464 aa17.51■□□□□ 0.39
HCFC1-201ENST00000310441 FEZ2Q9UHY8 353 aaPredicted RBP17.51■□□□□ 0.39
HCFC1-201ENST00000310441 CLGNO14967 610 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 C6orf50Q9HD87 102 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 PIK3R4Q99570 1358 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 TRPC3Q13507 836 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 TSNAXIP1Q2TAA8 658 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 NCAPGQ9BPX3 1015 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 RTL9Q8NET4 1388 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 SKILP12757 684 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 SRGAP1Q7Z6B7 1085 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 CALCOCO2Q13137 446 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 ATP6V0A2Q9Y487 856 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 INTS8Q75QN2 995 aaKnown RBP17.5■□□□□ 0.39
HCFC1-201ENST00000310441 LIG1P18858 919 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 INF2Q27J81 1249 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 KIFAP3Q92845 792 aa17.5■□□□□ 0.39
HCFC1-201ENST00000310441 POTEDQ86YR6 584 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 CHMP4BP1P59074 171 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 ATL3Q6DD88 541 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 CNGA4Q8IV77 575 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 VPS52Q8N1B4 723 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 ECHDC1Q9NTX5 307 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 BCAP29Q9UHQ4 241 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 PPP1R7Q15435 360 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 NEK11Q8NG66 645 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 PPFIA2O75334 1257 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 ZSCAN23Q3MJ62 389 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.49■□□□□ 0.39
HCFC1-201ENST00000310441 NEK1Q96PY6 1258 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 USP16Q9Y5T5 823 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 CRCPO75575 148 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 ESR2Q92731 530 aa17.49■□□□□ 0.39
HCFC1-201ENST00000310441 SYT1P21579 422 aa17.48■□□□□ 0.39
HCFC1-201ENST00000310441 WTAPQ15007 396 aa17.48■□□□□ 0.39
HCFC1-201ENST00000310441 CCDC42Q96M95 316 aa17.48■□□□□ 0.39
HCFC1-201ENST00000310441 FAM169AQ9Y6X4 670 aa17.48■□□□□ 0.39
HCFC1-201ENST00000310441 STK10O94804 968 aaKnown RBP17.48■□□□□ 0.39
HCFC1-201ENST00000310441 MICU3Q86XE3 530 aa17.48■□□□□ 0.39
HCFC1-201ENST00000310441 IFIT1BQ5T764 474 aaKnown RBP17.48■□□□□ 0.39
HCFC1-201ENST00000310441 CC2D2AQ9P2K1 1620 aa17.48■□□□□ 0.39
HCFC1-201ENST00000310441 BIN1O00499 593 aa17.48■□□□□ 0.39
HCFC1-201ENST00000310441 GIGYF1O75420 1035 aaPredicted RBP17.48■□□□□ 0.39
HCFC1-201ENST00000310441 ZSCAN22P10073 491 aaPredicted RBP17.48■□□□□ 0.39
HCFC1-201ENST00000310441 CALM1P0DP23 149 aa17.47■□□□□ 0.39
HCFC1-201ENST00000310441 CALM2P0DP24 149 aa17.47■□□□□ 0.39
HCFC1-201ENST00000310441 CALM3P0DP25 149 aa17.47■□□□□ 0.39
HCFC1-201ENST00000310441 MICALL1Q8N3F8 863 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms