RNA–Protein interactions for RNA: ENST00000302731.4

CLP1-201, Transcript of cleavage and polyadenylation factor I subunit 1, humanhuman

TSL 2 BASIC

Gene CLP1, Length 1,634 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLP1-201ENST00000302731 ATP2B3Q16720 1220 aa12.77□□□□□ -0.37
CLP1-201ENST00000302731 FAM196AQ6ZSG2 479 aa12.77□□□□□ -0.37
CLP1-201ENST00000302731 DNAJC2Q99543 621 aaKnown RBP12.77□□□□□ -0.37
CLP1-201ENST00000302731 TM6SF1Q9BZW5 370 aa12.77□□□□□ -0.37
CLP1-201ENST00000302731 RTCBQ9Y3I0 505 aaKnown RBP12.77□□□□□ -0.37
CLP1-201ENST00000302731 SNX14Q9Y5W7 946 aa12.77□□□□□ -0.37
CLP1-201ENST00000302731 HCLS1P14317 486 aaPredicted RBP12.76□□□□□ -0.37
CLP1-201ENST00000302731 PTH1RQ03431 593 aa12.76□□□□□ -0.37
CLP1-201ENST00000302731 SLC10A5Q5PT55 438 aa12.76□□□□□ -0.37
CLP1-201ENST00000302731 GORABQ5T7V8 394 aa12.76□□□□□ -0.37
CLP1-201ENST00000302731 SPRYD3Q8NCJ5 442 aa12.76□□□□□ -0.37
CLP1-201ENST00000302731 NYXQ9GZU5 481 aa12.76□□□□□ -0.37
CLP1-201ENST00000302731 CWC22Q9HCG8 908 aaKnown RBP12.76□□□□□ -0.37
CLP1-201ENST00000302731 HELLSQ9NRZ9 838 aa12.76□□□□□ -0.37
CLP1-201ENST00000302731 COL24A1Q17RW2 1714 aa12.75□□□□□ -0.37
CLP1-201ENST00000302731 GNPATO15228 680 aa12.75□□□□□ -0.37
CLP1-201ENST00000302731 ZKSCAN1P17029 563 aaPredicted RBP12.75□□□□□ -0.37
CLP1-201ENST00000302731 SF3B3Q15393 1217 aaKnown RBP12.75□□□□□ -0.37
CLP1-201ENST00000302731 MCMDC2Q4G0Z9 681 aa12.75□□□□□ -0.37
CLP1-201ENST00000302731 TTC39AQ5SRH9 613 aa12.75□□□□□ -0.37
CLP1-201ENST00000302731 EDC3Q96F86 508 aaKnown RBP12.75□□□□□ -0.37
CLP1-201ENST00000302731 BCL2L12Q9HB09 334 aa12.75□□□□□ -0.37
CLP1-201ENST00000302731 HMG20BQ9P0W2 317 aa12.75□□□□□ -0.37
CLP1-201ENST00000302731 C4BP0C0L5 1744 aa12.75□□□□□ -0.37
CLP1-201ENST00000302731 GOLIM4O00461 696 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 ZPR1O75312 459 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 TAF5LO75529 589 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 ADRA2BP18089 450 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 SSFA2P28290 1259 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 PUM3Q15397 648 aaKnown RBP12.74□□□□□ -0.37
CLP1-201ENST00000302731 TSGA10IPQ3SY00 556 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 FAM182BQ5T319 152 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 RNF20Q5VTR2 975 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 USPL1Q5W0Q7 1092 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 DDX46Q7L014 1031 aaKnown RBP12.74□□□□□ -0.37
CLP1-201ENST00000302731 LPIN2Q92539 896 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 MPHOSPH8Q99549 860 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 RBM8AQ9Y5S9 174 aaKnown RBP12.74□□□□□ -0.37
CLP1-201ENST00000302731 ARAP2Q8WZ64 1704 aa12.74□□□□□ -0.37
CLP1-201ENST00000302731 ZFYP08048 801 aaPredicted RBP12.73□□□□□ -0.37
CLP1-201ENST00000302731 FGFR2P21802 821 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 ADORA1P30542 326 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 IGHMBP2P38935 993 aaKnown RBP12.73□□□□□ -0.37
CLP1-201ENST00000302731 KCNQ4P56696 695 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 CUL4AQ13619 759 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 SLC27A3Q5K4L6 730 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 RASEFQ8IZ41 740 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 INTS4Q96HW7 963 aaKnown RBP12.73□□□□□ -0.37
CLP1-201ENST00000302731 CDC5LQ99459 802 aaKnown RBP12.73□□□□□ -0.37
CLP1-201ENST00000302731 UQCRFS1P1P0C7P4 283 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 RAB3GAP1Q15042 981 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 ZMYM1Q5SVZ6 1142 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 TBC1D9BQ66K14 1250 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 CREB3L3Q68CJ9 461 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 PRPF40BQ6NWY9 871 aaKnown RBP12.73□□□□□ -0.37
CLP1-201ENST00000302731 KRT27Q7Z3Y8 459 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 TMX3Q96JJ7 454 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 TTC14Q96N46 770 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 SETDB2Q96T68 719 aa12.73□□□□□ -0.37
CLP1-201ENST00000302731 FAM177BA6PVY3 158 aa12.72□□□□□ -0.37
CLP1-201ENST00000302731 RNF113AO15541 343 aaKnown RBP12.72□□□□□ -0.37
CLP1-201ENST00000302731 FRAT2O75474 233 aaPredicted RBP12.72□□□□□ -0.37
CLP1-201ENST00000302731 PSMA5P28066 241 aa12.72□□□□□ -0.37
CLP1-201ENST00000302731 ARID4AP29374 1257 aaPredicted RBP12.72□□□□□ -0.37
CLP1-201ENST00000302731 KCNJ4P48050 445 aa12.72□□□□□ -0.37
CLP1-201ENST00000302731 TTF1Q15361 905 aaPredicted RBP12.72□□□□□ -0.37
CLP1-201ENST00000302731 ZNF772Q68DY9 489 aaPredicted RBP12.72□□□□□ -0.37
CLP1-201ENST00000302731 ZNF589Q86UQ0 364 aaPredicted RBP12.72□□□□□ -0.37
CLP1-201ENST00000302731 ARHGEF1Q92888 912 aaKnown RBP12.72□□□□□ -0.37
CLP1-201ENST00000302731 ZSWIM6Q9HCJ5 1215 aa12.72□□□□□ -0.37
CLP1-201ENST00000302731 NDUFB9Q9Y6M9 179 aa12.72□□□□□ -0.37
CLP1-201ENST00000302731 U3KPZ7 1027 aaPredicted RBP12.72□□□□□ -0.37
CLP1-201ENST00000302731 SLC27A2O14975 620 aa12.71□□□□□ -0.37
CLP1-201ENST00000302731 SLC5A1P13866 664 aa12.71□□□□□ -0.37
CLP1-201ENST00000302731 NUCB2P80303 420 aa12.71□□□□□ -0.37
CLP1-201ENST00000302731 KRT32Q14532 448 aa12.71□□□□□ -0.37
CLP1-201ENST00000302731 ERFEQ4G0M1 354 aa12.71□□□□□ -0.37
CLP1-201ENST00000302731 TRAPPC3LQ5T215 181 aa12.71□□□□□ -0.37
CLP1-201ENST00000302731 VPS53Q5VIR6 699 aa12.71□□□□□ -0.37
CLP1-201ENST00000302731 DSCC1Q9BVC3 393 aa12.71□□□□□ -0.37
CLP1-201ENST00000302731 UPF3BQ9BZI7 483 aaKnown RBP12.71□□□□□ -0.37
CLP1-201ENST00000302731 SEC31BQ9NQW1 1179 aa12.71□□□□□ -0.37
CLP1-201ENST00000302731 RPAP1Q9BWH6 1393 aaPredicted RBP12.71□□□□□ -0.37
CLP1-201ENST00000302731 RBM6P78332 1123 aaKnown RBP12.7□□□□□ -0.38
CLP1-201ENST00000302731 FKBP4Q02790 459 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLP1-201ENST00000302731 ZSCAN25Q6NSZ9 544 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 TPTE2Q6XPS3 522 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 CYP46A1Q9Y6A2 500 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 C4AP0C0L4 1744 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 AKAP11Q9UKA4 1901 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 BRWD3Q6RI45 1802 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 GTF2E1P29083 439 aaPredicted RBP12.7□□□□□ -0.38
CLP1-201ENST00000302731 RFC4P35249 363 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 MCAMP43121 646 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 CCDC102BQ68D86 513 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 CLEC17AQ6ZS10 378 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 RUFY3Q7L099 469 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 NLRP3Q96P20 1036 aa12.7□□□□□ -0.38
CLP1-201ENST00000302731 ALDH8A1Q9H2A2 487 aaPredicted RBP12.7□□□□□ -0.38
CLP1-201ENST00000302731 BSDC1Q9NW68 430 aaPredicted RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms