RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 GPSM2P81274 684 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 WASHC4Q2M389 1173 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 DCAF8Q5TAQ9 597 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 CIAPIN1Q6FI81 312 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 G2E3Q7L622 706 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 WDR63Q8IWG1 891 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 SEC31BQ9NQW1 1179 aa12.5□□□□□ -0.41
VPS41-201ENST00000265745 ADARB2Q9NS39 739 aaKnown RBP12.5□□□□□ -0.41
VPS41-201ENST00000265745 MKRN1Q9UHC7 482 aaKnown RBP12.5□□□□□ -0.41
VPS41-201ENST00000265745 TNIP1Q15025 636 aa12.49□□□□□ -0.41
VPS41-201ENST00000265745 CCDC152Q4G0S7 254 aa12.49□□□□□ -0.41
VPS41-201ENST00000265745 PCNTO95613 3336 aa12.48□□□□□ -0.41
VPS41-201ENST00000265745 CNTNAP1P78357 1384 aa12.48□□□□□ -0.41
VPS41-201ENST00000265745 C6orf229H3BNL8 230 aa12.48□□□□□ -0.41
VPS41-201ENST00000265745 SPDYE1Q8NFV5 336 aaPredicted RBP12.48□□□□□ -0.41
VPS41-201ENST00000265745 TBC1D16Q8TBP0 767 aa12.48□□□□□ -0.41
VPS41-201ENST00000265745 PODXL2Q9NZ53 605 aa12.48□□□□□ -0.41
VPS41-201ENST00000265745 SALL2Q9Y467 1007 aaPredicted RBP12.48□□□□□ -0.41
VPS41-201ENST00000265745 CDHR2Q9BYE9 1310 aa12.47□□□□□ -0.41
VPS41-201ENST00000265745 FANCIQ9NVI1 1328 aa12.47□□□□□ -0.41
VPS41-201ENST00000265745 RIOK3O14730 519 aaKnown RBP12.47□□□□□ -0.41
VPS41-201ENST00000265745 RIMBP2O15034 1052 aa12.47□□□□□ -0.41
VPS41-201ENST00000265745 VAMP4O75379 141 aa12.47□□□□□ -0.41
VPS41-201ENST00000265745 HSPA1AP0DMV8 641 aaKnown RBP12.47□□□□□ -0.41
VPS41-201ENST00000265745 HSPA1BP0DMV9 641 aaKnown RBP12.47□□□□□ -0.41
VPS41-201ENST00000265745 NEXNQ0ZGT2 675 aa12.47□□□□□ -0.41
VPS41-201ENST00000265745 CWF19L2Q2TBE0 894 aaKnown RBP12.47□□□□□ -0.41
VPS41-201ENST00000265745 COL13A1Q5TAT6 717 aaPredicted RBP12.47□□□□□ -0.41
VPS41-201ENST00000265745 CCDC85AQ96PX6 553 aaPredicted RBP12.47□□□□□ -0.41
VPS41-201ENST00000265745 EYA3Q99504 573 aa12.47□□□□□ -0.41
VPS41-201ENST00000265745 BCL2L13Q9BXK5 485 aa12.47□□□□□ -0.41
VPS41-201ENST00000265745 DBNDD1Q9H9R9 158 aa12.47□□□□□ -0.41
VPS41-201ENST00000265745 PGAP2Q9UHJ9 254 aa12.47□□□□□ -0.41
VPS41-201ENST00000265745 CNOT7Q9UIV1 285 aaKnown RBP12.47□□□□□ -0.41
VPS41-201ENST00000265745 NEURL1BA8MQ27 555 aa12.46□□□□□ -0.41
VPS41-201ENST00000265745 H7C1W4 665 aa12.46□□□□□ -0.41
VPS41-201ENST00000265745 PSMD14O00487 310 aa12.46□□□□□ -0.41
VPS41-201ENST00000265745 VEGFBP49765 207 aa12.46□□□□□ -0.41
VPS41-201ENST00000265745 HIRAP54198 1017 aaPredicted RBP12.46□□□□□ -0.41
VPS41-201ENST00000265745 FMR1Q06787 632 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS41-201ENST00000265745 FLIIQ13045 1269 aa12.46□□□□□ -0.41
VPS41-201ENST00000265745 TTLL11Q8NHH1 800 aa12.46□□□□□ -0.41
VPS41-201ENST00000265745 ZC3H15Q8WU90 426 aaKnown RBP12.46□□□□□ -0.41
VPS41-201ENST00000265745 ZC3H12CQ9C0D7 883 aaKnown RBP12.46□□□□□ -0.41
VPS41-201ENST00000265745 KCNQ5Q9NR82 932 aa12.46□□□□□ -0.41
VPS41-201ENST00000265745 ANKIB1Q9P2G1 1089 aa12.46□□□□□ -0.41
VPS41-201ENST00000265745 CACNA1SQ13698 1873 aa12.46□□□□□ -0.42
VPS41-201ENST00000265745 SCN4AP35499 1836 aa12.46□□□□□ -0.42
VPS41-201ENST00000265745 SHTN1A0MZ66 631 aa12.45□□□□□ -0.42
VPS41-201ENST00000265745 RASSF10A6NK89 507 aa12.45□□□□□ -0.42
VPS41-201ENST00000265745 TRAF5O00463 557 aa12.45□□□□□ -0.42
VPS41-201ENST00000265745 CTSWP56202 376 aa12.45□□□□□ -0.42
VPS41-201ENST00000265745 EXOSC9Q06265 439 aaKnown RBP12.45□□□□□ -0.42
VPS41-201ENST00000265745 DOK7Q18PE1 504 aa12.45□□□□□ -0.42
VPS41-201ENST00000265745 DEFB115Q30KQ5 88 aa12.45□□□□□ -0.42
VPS41-201ENST00000265745 CST9Q5W186 159 aa12.45□□□□□ -0.42
VPS41-201ENST00000265745 ANKRD18AQ8IVF6 992 aa12.45□□□□□ -0.42
VPS41-201ENST00000265745 DPF2Q92785 391 aa12.45□□□□□ -0.42
VPS41-201ENST00000265745 GPR101Q96P66 508 aaPredicted RBP12.45□□□□□ -0.42
VPS41-201ENST00000265745 H7C1D1 291 aa12.44□□□□□ -0.42
VPS41-201ENST00000265745 ECE2O60344 883 aa12.44□□□□□ -0.42
VPS41-201ENST00000265745 UFL1O94874 794 aa12.44□□□□□ -0.42
VPS41-201ENST00000265745 GCKRQ14397 625 aa12.44□□□□□ -0.42
VPS41-201ENST00000265745 MICALL2Q8IY33 904 aa12.44□□□□□ -0.42
VPS41-201ENST00000265745 FAM9BQ8IZU0 186 aa12.44□□□□□ -0.42
VPS41-201ENST00000265745 TRPM4Q8TD43 1214 aa12.44□□□□□ -0.42
VPS41-201ENST00000265745 CDC5LQ99459 802 aaKnown RBP12.44□□□□□ -0.42
VPS41-201ENST00000265745 GREM2Q9H772 168 aa12.44□□□□□ -0.42
VPS41-201ENST00000265745 GGA1Q9UJY5 639 aa12.44□□□□□ -0.42
VPS41-201ENST00000265745 ABT1Q9ULW3 272 aaKnown RBP12.44□□□□□ -0.42
VPS41-201ENST00000265745 VIL1P09327 827 aaKnown RBP12.43□□□□□ -0.42
VPS41-201ENST00000265745 RPS12P25398 132 aaKnown RBP12.43□□□□□ -0.42
VPS41-201ENST00000265745 FKBP5Q13451 457 aaPredicted RBP12.43□□□□□ -0.42
VPS41-201ENST00000265745 UBE3BQ7Z3V4 1068 aa12.43□□□□□ -0.42
VPS41-201ENST00000265745 LINS1Q8NG48 757 aa12.43□□□□□ -0.42
VPS41-201ENST00000265745 DNAAF4Q8WXU2 420 aa12.43□□□□□ -0.42
VPS41-201ENST00000265745 PLA2G12BQ9BX93 195 aa12.43□□□□□ -0.42
VPS41-201ENST00000265745 BSDC1Q9NW68 430 aaPredicted RBP12.43□□□□□ -0.42
VPS41-201ENST00000265745 ADAMTSL1Q8N6G6 1762 aa12.43□□□□□ -0.42
VPS41-201ENST00000265745 DUOX1Q9NRD9 1551 aa12.43□□□□□ -0.42
VPS41-201ENST00000265745 RTL9Q8NET4 1388 aa12.43□□□□□ -0.42
VPS41-201ENST00000265745 LTBP1Q14766 1721 aa12.42□□□□□ -0.42
VPS41-201ENST00000265745 COL4A1P02462 1669 aa12.42□□□□□ -0.42
VPS41-201ENST00000265745 WTIPA6NIX2 430 aaPredicted RBP12.42□□□□□ -0.42
VPS41-201ENST00000265745 CASP7P55210 303 aa12.42□□□□□ -0.42
VPS41-201ENST00000265745 CDC37L1Q7L3B6 337 aa12.42□□□□□ -0.42
VPS41-201ENST00000265745 SAMD7Q7Z3H4 446 aa12.42□□□□□ -0.42
VPS41-201ENST00000265745 GLIS2Q9BZE0 524 aaPredicted RBP12.42□□□□□ -0.42
VPS41-201ENST00000265745 MYH16Q9H6N6 1097 aa12.42□□□□□ -0.42
VPS41-201ENST00000265745 WBP1LQ9NX94 342 aa12.42□□□□□ -0.42
VPS41-201ENST00000265745 MINPP1Q9UNW1 487 aa12.42□□□□□ -0.42
VPS41-201ENST00000265745 XDHP47989 1333 aa12.41□□□□□ -0.42
VPS41-201ENST00000265745 ANKRD36CQ5JPF3 1778 aa12.41□□□□□ -0.42
VPS41-201ENST00000265745 EGFRP00533 1210 aa12.41□□□□□ -0.42
VPS41-201ENST00000265745 CSF1RP07333 972 aa12.41□□□□□ -0.42
VPS41-201ENST00000265745 ATP2B4P23634 1241 aa12.41□□□□□ -0.42
VPS41-201ENST00000265745 FAM212AQ96EL1 285 aa12.41□□□□□ -0.42
VPS41-201ENST00000265745 TLL2Q9Y6L7 1015 aa12.41□□□□□ -0.42
VPS41-201ENST00000265745 WDR33Q9C0J8 1336 aaKnown RBP12.4□□□□□ -0.42
VPS41-201ENST00000265745 G3V3G9 751 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms