RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 FOXD4L5Q5VV16 416 aaPredicted RBP15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 USPL1Q5W0Q7 1092 aa15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 BLOC1S2Q6QNY1 142 aa15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 FOXD4L4Q8WXT5 416 aaPredicted RBP15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 BRPF3Q9ULD4 1205 aa15.48■□□□□ 0.07
SPTLC1-201ENST00000262554 A0A0G2JS52 829 aa15.47■□□□□ 0.07
SPTLC1-201ENST00000262554 TOM1O60784 492 aa15.47■□□□□ 0.07
SPTLC1-201ENST00000262554 KRT32Q14532 448 aa15.47■□□□□ 0.07
SPTLC1-201ENST00000262554 CCDC158Q5M9N0 1113 aa15.47■□□□□ 0.07
SPTLC1-201ENST00000262554 CCDC85AQ96PX6 553 aaPredicted RBP15.47■□□□□ 0.07
SPTLC1-201ENST00000262554 LARP6Q9BRS8 491 aaKnown RBP15.47■□□□□ 0.07
SPTLC1-201ENST00000262554 ANKRD1Q15327 319 aa15.46■□□□□ 0.07
SPTLC1-201ENST00000262554 GORABQ5T7V8 394 aa15.46■□□□□ 0.07
SPTLC1-201ENST00000262554 BARGINQ6ZT62 677 aa15.46■□□□□ 0.07
SPTLC1-201ENST00000262554 HELLSQ9NRZ9 838 aa15.46■□□□□ 0.07
SPTLC1-201ENST00000262554 TRMT112Q9UI30 125 aaKnown RBP15.46■□□□□ 0.07
SPTLC1-201ENST00000262554 TBC1D2BQ9UPU7 963 aa15.46■□□□□ 0.07
SPTLC1-201ENST00000262554 SMC3Q9UQE7 1217 aa15.46■□□□□ 0.07
SPTLC1-201ENST00000262554 IRS4O14654 1257 aaPredicted RBP15.46■□□□□ 0.06
SPTLC1-201ENST00000262554 PRPF40AO75400 957 aaKnown RBP15.46■□□□□ 0.06
SPTLC1-201ENST00000262554 MRE11P49959 708 aa15.46■□□□□ 0.06
SPTLC1-201ENST00000262554 CTSWP56202 376 aa15.46■□□□□ 0.06
SPTLC1-201ENST00000262554 MARCH10Q8NA82 808 aaPredicted RBP15.46■□□□□ 0.06
SPTLC1-201ENST00000262554 TTLL11Q8NHH1 800 aa15.46■□□□□ 0.06
SPTLC1-201ENST00000262554 ALDH8A1Q9H2A2 487 aaPredicted RBP15.46■□□□□ 0.06
SPTLC1-201ENST00000262554 RTN4Q9NQC3 1192 aaKnown RBP15.46■□□□□ 0.06
SPTLC1-201ENST00000262554 ANKRD18BA2A2Z9 1011 aa15.45■□□□□ 0.06
SPTLC1-201ENST00000262554 LRRFIP1Q32MZ4 808 aaKnown RBP15.45■□□□□ 0.06
SPTLC1-201ENST00000262554 TTC39AQ5SRH9 613 aa15.45■□□□□ 0.06
SPTLC1-201ENST00000262554 CCDC129Q6ZRS4 1044 aa15.45■□□□□ 0.06
SPTLC1-201ENST00000262554 SYNE4Q8N205 404 aa15.45■□□□□ 0.06
SPTLC1-201ENST00000262554 ACSBG1Q96GR2 724 aa15.45■□□□□ 0.06
SPTLC1-201ENST00000262554 CCDC87Q9NVE4 849 aa15.45■□□□□ 0.06
SPTLC1-201ENST00000262554 SLIT2O94813 1529 aa15.45■□□□□ 0.06
SPTLC1-201ENST00000262554 CICQ96RK0 1608 aaPredicted RBP15.45■□□□□ 0.06
SPTLC1-201ENST00000262554 PDE8AO60658 829 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 LARGE1O95461 756 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 NCLP19338 710 aaKnown RBP15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 ITGA6P23229 1130 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 RPS6KB1P23443 525 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 ATP6V1AP38606 617 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 PIP4K2BP78356 416 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 CCDC83Q8IWF9 413 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 XAGE2Q96GT9 111 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 SEC62Q99442 399 aaKnown RBP15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 RREB1Q92766 1687 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 XRCC6P12956 609 aaKnown RBP eCLIP15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 EIF5P55010 431 aaKnown RBP15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 LDHAL6AQ6ZMR3 332 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 ZNF34Q8IZ26 560 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 GREM2Q9H772 168 aa15.44■□□□□ 0.06
SPTLC1-201ENST00000262554 LOC102724428A0A0B4J2F2 783 aa15.43■□□□□ 0.06
SPTLC1-201ENST00000262554 RNF113AO15541 343 aaKnown RBP15.43■□□□□ 0.06
SPTLC1-201ENST00000262554 CRKLP46109 303 aaKnown RBP15.43■□□□□ 0.06
SPTLC1-201ENST00000262554 SIK1P57059 783 aa15.43■□□□□ 0.06
SPTLC1-201ENST00000262554 METTL24Q5JXM2 366 aa15.43■□□□□ 0.06
SPTLC1-201ENST00000262554 ZMYM1Q5SVZ6 1142 aa15.43■□□□□ 0.06
SPTLC1-201ENST00000262554 INTS5Q6P9B9 1019 aaKnown RBP15.43■□□□□ 0.06
SPTLC1-201ENST00000262554 GRPEL1Q9HAV7 217 aa15.43■□□□□ 0.06
SPTLC1-201ENST00000262554 RIPOR2Q9Y4F9 1068 aa15.43■□□□□ 0.06
SPTLC1-201ENST00000262554 RIC1Q4ADV7 1423 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 CHGBP05060 677 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 FKBP4Q02790 459 aaKnown RBP eCLIP15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 ATP2B3Q16720 1220 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 ME3Q16798 604 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 AK7Q96M32 723 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 CNNM1Q9NRU3 951 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 TPCN1Q9ULQ1 816 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 ABCC12Q96J65 1359 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 UBN2Q6ZU65 1347 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 STX6O43752 255 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 ADORA1P30542 326 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 SMARCC1Q92922 1105 aaPredicted RBP15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 NEK1Q96PY6 1258 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 DSCC1Q9BVC3 393 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 TAF6LQ9Y6J9 622 aa15.42■□□□□ 0.06
SPTLC1-201ENST00000262554 MBD3O95983 291 aa15.41■□□□□ 0.06
SPTLC1-201ENST00000262554 ZSCAN22P10073 491 aaPredicted RBP15.41■□□□□ 0.06
SPTLC1-201ENST00000262554 SYT1P21579 422 aa15.41■□□□□ 0.06
SPTLC1-201ENST00000262554 GJB2P29033 226 aa15.41■□□□□ 0.06
SPTLC1-201ENST00000262554 CAVIN1Q6NZI2 390 aaKnown RBP15.41■□□□□ 0.06
SPTLC1-201ENST00000262554 CHAMP1Q96JM3 812 aa15.41■□□□□ 0.06
SPTLC1-201ENST00000262554 ZBTB12Q9Y330 459 aaPredicted RBP15.41■□□□□ 0.06
SPTLC1-201ENST00000262554 MYH7P12883 1935 aa15.41■□□□□ 0.06
SPTLC1-201ENST00000262554 ZFYP08048 801 aaPredicted RBP15.4■□□□□ 0.06
SPTLC1-201ENST00000262554 CYP21A2P08686 494 aa15.4■□□□□ 0.06
SPTLC1-201ENST00000262554 GPT2Q8TD30 523 aa15.4■□□□□ 0.06
SPTLC1-201ENST00000262554 ATP6V1DQ9Y5K8 247 aa15.4■□□□□ 0.06
SPTLC1-201ENST00000262554 PDIA4P13667 645 aaKnown RBP15.4■□□□□ 0.06
SPTLC1-201ENST00000262554 TOB2Q14106 344 aaPredicted RBP15.4■□□□□ 0.06
SPTLC1-201ENST00000262554 TCHHQ07283 1943 aa15.39■□□□□ 0.05
SPTLC1-201ENST00000262554 LAMA4Q16363 1823 aa15.39■□□□□ 0.05
SPTLC1-201ENST00000262554 MYH14Q7Z406 1995 aaKnown RBP15.39■□□□□ 0.05
SPTLC1-201ENST00000262554 MAST3O60307 1309 aa15.39■□□□□ 0.05
SPTLC1-201ENST00000262554 HMGB1P09429 215 aaKnown RBP15.39■□□□□ 0.05
SPTLC1-201ENST00000262554 ITPK1Q13572 414 aa15.39■□□□□ 0.05
SPTLC1-201ENST00000262554 PARP10Q53GL7 1025 aa15.39■□□□□ 0.05
SPTLC1-201ENST00000262554 GAS2L3Q86XJ1 694 aa15.39■□□□□ 0.05
SPTLC1-201ENST00000262554 NECAB1Q8N987 351 aa15.39■□□□□ 0.05
SPTLC1-201ENST00000262554 TCEANC2Q96MN5 208 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms