RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.68□□□□□ -0.86
PTPN3-201ENST00000262539 ANXA1P04083 346 aa9.68□□□□□ -0.86
PTPN3-201ENST00000262539 TSGA10IPQ3SY00 556 aa9.68□□□□□ -0.86
PTPN3-201ENST00000262539 IGKV5-2P06315 115 aa9.68□□□□□ -0.86
PTPN3-201ENST00000262539 UBE4AQ14139 1066 aa9.68□□□□□ -0.86
PTPN3-201ENST00000262539 UBE3CQ15386 1083 aa9.68□□□□□ -0.86
PTPN3-201ENST00000262539 FAM177A1Q8N128 213 aaPredicted RBP9.68□□□□□ -0.86
PTPN3-201ENST00000262539 BICC1Q9H694 974 aaKnown RBP9.68□□□□□ -0.86
PTPN3-201ENST00000262539 KDM4FA0A1W2PPD8 638 aa9.68□□□□□ -0.86
PTPN3-201ENST00000262539 CLEC17AQ6ZS10 378 aa9.68□□□□□ -0.86
PTPN3-201ENST00000262539 APPBP2Q92624 585 aa9.68□□□□□ -0.86
PTPN3-201ENST00000262539 ZSCAN16Q9H4T2 348 aaPredicted RBP9.68□□□□□ -0.86
PTPN3-201ENST00000262539 WDR19Q8NEZ3 1342 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 CHD2O14647 1828 aaKnown RBP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 LOC102724428A0A0B4J2F2 783 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 KCNQ3O43525 872 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 SIK1P57059 783 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 ZFYVE27Q5T4F4 411 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 ANKRD18AQ8IVF6 992 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 SMARCA5O60264 1052 aaPredicted RBP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 RBM5P52756 815 aaKnown RBP eCLIP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 CUL4AQ13619 759 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 RAB3GAP1Q15042 981 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 PUM3Q15397 648 aaKnown RBP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 SNRKQ9NRH2 765 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 SALL3Q9BXA9 1300 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 RTL9Q8NET4 1388 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 ADAMTS2O95450 1211 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 GSPT1P15170 499 aaKnown RBP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 ATP6V1AP38606 617 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 JAKMIP1Q96N16 626 aaKnown RBP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 HAUS7Q99871 368 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 TRAK2O60296 914 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 SSFA2P28290 1259 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 PPM1FP49593 454 aaPredicted RBP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 TRIM22Q8IYM9 498 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 RTCBQ9Y3I0 505 aaKnown RBP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 PLCG2P16885 1265 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 GSTO1P78417 241 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 EAF2Q96CJ1 260 aaPredicted RBP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 DNAJC2Q99543 621 aaKnown RBP9.67□□□□□ -0.86
PTPN3-201ENST00000262539 PAG1Q9NWQ8 432 aa9.67□□□□□ -0.86
PTPN3-201ENST00000262539 BMP15O95972 392 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 FOSBP53539 338 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 RCAN1P53805 252 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 EIF5P55010 431 aaKnown RBP9.66□□□□□ -0.86
PTPN3-201ENST00000262539 CWC27Q6UX04 472 aaKnown RBP9.66□□□□□ -0.86
PTPN3-201ENST00000262539 CCAR2Q8N163 923 aaKnown RBP9.66□□□□□ -0.86
PTPN3-201ENST00000262539 AIDAQ96BJ3 306 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 HOOK1Q9UJC3 728 aaKnown RBP9.66□□□□□ -0.86
PTPN3-201ENST00000262539 MAP4K1Q92918 833 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 KDM6AO15550 1401 aaPredicted RBP9.66□□□□□ -0.86
PTPN3-201ENST00000262539 MRC1P22897 1456 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 SPATA31A1Q5TZJ5 1347 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 ATP5J2-PTCD1G3V325 749 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 DEKP35659 375 aaKnown RBP9.66□□□□□ -0.86
PTPN3-201ENST00000262539 PTPN12Q05209 780 aaKnown RBP9.66□□□□□ -0.86
PTPN3-201ENST00000262539 NEK1Q96PY6 1258 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 BOLA2Q9H3K6 86 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 DDX46Q7L014 1031 aaKnown RBP9.66□□□□□ -0.86
PTPN3-201ENST00000262539 MEGF6O75095 1541 aa9.66□□□□□ -0.86
PTPN3-201ENST00000262539 TNS2Q63HR2 1409 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 PIGBQ92521 554 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 SIL1Q9H173 461 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 PIK3C2AO00443 1686 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 CNTNAP4Q9C0A0 1308 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 KDM4AO75164 1064 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 KRT23Q9C075 422 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 ZBTB22O15209 634 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 TRAF1Q13077 416 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 PDIA6Q15084 440 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 FOXD4L6Q3SYB3 417 aaPredicted RBP9.65□□□□□ -0.86
PTPN3-201ENST00000262539 FOXD4L3Q6VB84 417 aaPredicted RBP9.65□□□□□ -0.86
PTPN3-201ENST00000262539 CCDC73Q6ZRK6 1079 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 CCDC8Q9H0W5 538 aaPredicted RBP9.65□□□□□ -0.86
PTPN3-201ENST00000262539 DENND2AQ9ULE3 1009 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 RBM8AQ9Y5S9 174 aaKnown RBP9.65□□□□□ -0.86
PTPN3-201ENST00000262539 NCOA7Q8NI08 942 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 SPATA31A5Q5VU36 1347 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 SPATA31A7Q8IWB4 1347 aa9.65□□□□□ -0.86
PTPN3-201ENST00000262539 RPS6KA4O75676 772 aa9.65□□□□□ -0.87
PTPN3-201ENST00000262539 PRIM1P49642 420 aaKnown RBP9.65□□□□□ -0.87
PTPN3-201ENST00000262539 ATP2B2Q01814 1243 aa9.65□□□□□ -0.87
PTPN3-201ENST00000262539 PRPF40BQ6NWY9 871 aaKnown RBP9.65□□□□□ -0.87
PTPN3-201ENST00000262539 FAM196AQ6ZSG2 479 aa9.65□□□□□ -0.87
PTPN3-201ENST00000262539 DHX32Q7L7V1 743 aaKnown RBP9.65□□□□□ -0.87
PTPN3-201ENST00000262539 TMX3Q96JJ7 454 aa9.65□□□□□ -0.87
PTPN3-201ENST00000262539 TMEM87BQ96K49 555 aa9.65□□□□□ -0.87
PTPN3-201ENST00000262539 GTPBP4Q9BZE4 634 aaKnown RBP9.65□□□□□ -0.87
PTPN3-201ENST00000262539 EPS15P42566 896 aa9.65□□□□□ -0.87
PTPN3-201ENST00000262539 A1BGP04217 495 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 CSF1RP07333 972 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 CCDC70Q6NSX1 233 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 SETDB2Q96T68 719 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 SPDYE4A6NLX3 237 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 MCM5P33992 734 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 BRMS1Q9HCU9 246 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 LRRC37A3O60309 1634 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 CC2D2BQ6DHV5 1058 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 CTAGE5O15320 804 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms