RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 PTCD1O75127 700 aaKnown RBP11.91□□□□□ -0.5
LIG3-201ENST00000262327 MAP3K11Q16584 847 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 LINS1Q8NG48 757 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 XAGE3Q8WTP9 111 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 FBXW7Q969H0 707 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 TNMDQ9H2S6 317 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 MRVI1Q9Y6F6 885 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 NWD2Q9ULI1 1742 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 SCN11AQ9UI33 1791 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 RPS6KB1P23443 525 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 COPS6Q7L5N1 327 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 BICD2Q8TD16 824 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 FTOQ9C0B1 505 aaKnown RBP eCLIP11.9□□□□□ -0.5
LIG3-201ENST00000262327 MRC1P22897 1456 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 SIPA1L3O60292 1781 aaPredicted RBP11.9□□□□□ -0.5
LIG3-201ENST00000262327 KDM6AO15550 1401 aaPredicted RBP11.9□□□□□ -0.5
LIG3-201ENST00000262327 CACNA1FO60840 1977 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 NRAPQ86VF7 1730 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 NR1I2O75469 434 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 ADAMTS2O95450 1211 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 NKX1-1Q15270 411 aaPredicted RBP11.9□□□□□ -0.5
LIG3-201ENST00000262327 TAOK2Q9UL54 1235 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 DISP2A7MBM2 1401 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 SLIT2O94813 1529 aa11.9□□□□□ -0.5
LIG3-201ENST00000262327 PSMA5P28066 241 aa11.9□□□□□ -0.51
LIG3-201ENST00000262327 DMTNQ08495 405 aa11.9□□□□□ -0.51
LIG3-201ENST00000262327 PDIA6Q15084 440 aa11.9□□□□□ -0.51
LIG3-201ENST00000262327 DDX46Q7L014 1031 aaKnown RBP11.9□□□□□ -0.51
LIG3-201ENST00000262327 CDCA7Q9BWT1 371 aaPredicted RBP11.9□□□□□ -0.51
LIG3-201ENST00000262327 THRAP3Q9Y2W1 955 aaKnown RBP11.9□□□□□ -0.51
LIG3-201ENST00000262327 NUTM2BA6NNL0 878 aaPredicted RBP11.89□□□□□ -0.51
LIG3-201ENST00000262327 NUTM2EB1AL46 878 aaPredicted RBP11.89□□□□□ -0.51
LIG3-201ENST00000262327 TFCP2Q12800 502 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 CCDC186Q7Z3E2 898 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 NUTM2AQ8IVF1 878 aaPredicted RBP11.89□□□□□ -0.51
LIG3-201ENST00000262327 PLCD3Q8N3E9 789 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 NFATC2IPQ8NCF5 419 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 SLC52A2Q9HAB3 445 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 CBX8Q9HC52 389 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 KIAA1524Q8TCG1 905 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 LEO1Q8WVC0 666 aaPredicted RBP11.89□□□□□ -0.51
LIG3-201ENST00000262327 ERCC4Q92889 916 aaPredicted RBP11.89□□□□□ -0.51
LIG3-201ENST00000262327 KCNB2Q92953 911 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 BRF1Q92994 677 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 DNAJC25Q9H1X3 360 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 TMEM51Q9NW97 253 aa11.89□□□□□ -0.51
LIG3-201ENST00000262327 DBNLQ9UJU6 430 aaKnown RBP11.89□□□□□ -0.51
LIG3-201ENST00000262327 COL15A1P39059 1388 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 A0A0G2JLW4 131 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 VGLL3A8MV65 326 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 TAF5LO75529 589 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 DDX58O95786 925 aaKnown RBP11.88□□□□□ -0.51
LIG3-201ENST00000262327 UTP14CQ5TAP6 766 aaKnown RBP11.88□□□□□ -0.51
LIG3-201ENST00000262327 RNF20Q5VTR2 975 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 Q6ZUG5 572 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 UBE3BQ7Z3V4 1068 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 FAM200AQ8TCP9 573 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 PGBD1Q96JS3 809 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 TRIM5Q9C035 493 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 CBX1P83916 185 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 GUCY1B3Q02153 619 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 PPP4R3BQ5MIZ7 849 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 CHST3Q7LGC8 479 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 DBNDD2Q9BQY9 259 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 DDX21Q9NR30 783 aaKnown RBP eCLIP11.88□□□□□ -0.51
LIG3-201ENST00000262327 USP16Q9Y5T5 823 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 NEURL1BA8MQ27 555 aa11.88□□□□□ -0.51
LIG3-201ENST00000262327 RIOK3O14730 519 aaKnown RBP11.88□□□□□ -0.51
LIG3-201ENST00000262327 ERVV-2B6SEH9 535 aa11.87□□□□□ -0.51
LIG3-201ENST00000262327 H3BQV1 296 aa11.87□□□□□ -0.51
LIG3-201ENST00000262327 CCT2P78371 535 aaKnown RBP11.87□□□□□ -0.51
LIG3-201ENST00000262327 IFFO2Q5TF58 517 aa11.87□□□□□ -0.51
LIG3-201ENST00000262327 C16orf45Q96MC5 204 aaPredicted RBP11.87□□□□□ -0.51
LIG3-201ENST00000262327 BCL2L12Q9HB09 334 aa11.87□□□□□ -0.51
LIG3-201ENST00000262327 KIF3AQ9Y496 699 aa11.87□□□□□ -0.51
LIG3-201ENST00000262327 HEG1Q9ULI3 1381 aa11.87□□□□□ -0.51
LIG3-201ENST00000262327 SPDYE4A6NLX3 237 aa11.87□□□□□ -0.51
LIG3-201ENST00000262327 NEXNQ0ZGT2 675 aa11.87□□□□□ -0.51
LIG3-201ENST00000262327 GCKRQ14397 625 aa11.87□□□□□ -0.51
LIG3-201ENST00000262327 SHANK3Q9BYB0 1731 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 ZNF496Q96IT1 587 aaPredicted RBP11.86□□□□□ -0.51
LIG3-201ENST00000262327 NEUROD6Q96NK8 337 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 NEK1Q96PY6 1258 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 SPTLC3Q9NUV7 552 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 SPATA31A1Q5TZJ5 1347 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 HIP1O00291 1037 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 PDCP20941 246 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 ZNF790Q6PG37 636 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 PRIMPOLQ96LW4 560 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 WNK3Q9BYP7 1800 aa11.86□□□□□ -0.51
LIG3-201ENST00000262327 CYP21A2P08686 494 aa11.85□□□□□ -0.51
LIG3-201ENST00000262327 CABP4P57796 275 aa11.85□□□□□ -0.51
LIG3-201ENST00000262327 ARID5BQ14865 1188 aa11.85□□□□□ -0.51
LIG3-201ENST00000262327 NCOA5Q9HCD5 579 aaKnown RBP11.85□□□□□ -0.51
LIG3-201ENST00000262327 SPATA31A5Q5VU36 1347 aa11.85□□□□□ -0.51
LIG3-201ENST00000262327 SPATA31A7Q8IWB4 1347 aa11.85□□□□□ -0.51
LIG3-201ENST00000262327 ZNF165P49910 485 aa11.85□□□□□ -0.51
LIG3-201ENST00000262327 ZSCAN20P17040 1043 aaPredicted RBP11.85□□□□□ -0.51
LIG3-201ENST00000262327 NAA30Q147X3 362 aaPredicted RBP11.85□□□□□ -0.51
LIG3-201ENST00000262327 ANKRD1Q15327 319 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms