RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 VPS53Q5VIR6 699 aa27.91■■■□□ 2.06
MSX2-201ENST00000239243 ZNF589Q86UQ0 364 aaPredicted RBP27.91■■■□□ 2.06
MSX2-201ENST00000239243 CNNM1Q9NRU3 951 aa27.91■■■□□ 2.06
MSX2-201ENST00000239243 NDUFB9Q9Y6M9 179 aa27.91■■■□□ 2.06
MSX2-201ENST00000239243 RIC1Q4ADV7 1423 aa27.91■■■□□ 2.06
MSX2-201ENST00000239243 THSD7AQ9UPZ6 1657 aa27.91■■■□□ 2.06
MSX2-201ENST00000239243 TTC39AQ5SRH9 613 aa27.91■■■□□ 2.06
MSX2-201ENST00000239243 XAGE2Q96GT9 111 aa27.91■■■□□ 2.06
MSX2-201ENST00000239243 SLC27A2O14975 620 aa27.9■■■□□ 2.06
MSX2-201ENST00000239243 NOL8Q76FK4 1167 aaKnown RBP27.9■■■□□ 2.06
MSX2-201ENST00000239243 HELLSQ9NRZ9 838 aa27.9■■■□□ 2.06
MSX2-201ENST00000239243 LIMCH1Q9UPQ0 1083 aa27.9■■■□□ 2.06
MSX2-201ENST00000239243 SUSD4Q5VX71 490 aa27.9■■■□□ 2.06
MSX2-201ENST00000239243 TRAK2O60296 914 aa27.89■■■□□ 2.06
MSX2-201ENST00000239243 AK2P54819 239 aa27.89■■■□□ 2.06
MSX2-201ENST00000239243 ATP2B3Q16720 1220 aa27.89■■■□□ 2.06
MSX2-201ENST00000239243 USPL1Q5W0Q7 1092 aa27.89■■■□□ 2.06
MSX2-201ENST00000239243 RUFY3Q7L099 469 aa27.88■■■□□ 2.05
MSX2-201ENST00000239243 BCORQ6W2J9 1755 aa27.88■■■□□ 2.05
MSX2-201ENST00000239243 LRP5O75197 1615 aa27.88■■■□□ 2.05
MSX2-201ENST00000239243 RPAP1Q9BWH6 1393 aaPredicted RBP27.88■■■□□ 2.05
MSX2-201ENST00000239243 TSGA10IPQ3SY00 556 aa27.88■■■□□ 2.05
MSX2-201ENST00000239243 PDRG1Q9NUG6 133 aa27.88■■■□□ 2.05
MSX2-201ENST00000239243 U3KPZ7 1027 aaPredicted RBP27.88■■■□□ 2.05
MSX2-201ENST00000239243 SKOR2Q2VWA4 1001 aaPredicted RBP27.87■■■□□ 2.05
MSX2-201ENST00000239243 CLEC4GQ6UXB4 293 aa27.87■■■□□ 2.05
MSX2-201ENST00000239243 RGL2O15211 777 aa27.87■■■□□ 2.05
MSX2-201ENST00000239243 KRT32Q14532 448 aa27.87■■■□□ 2.05
MSX2-201ENST00000239243 ADCK5Q3MIX3 580 aa27.87■■■□□ 2.05
MSX2-201ENST00000239243 CNTNAP4Q9C0A0 1308 aa27.86■■■□□ 2.05
MSX2-201ENST00000239243 NIP7Q9Y221 180 aaKnown RBP eCLIP27.86■■■□□ 2.05
MSX2-201ENST00000239243 BAG4O95429 457 aaKnown RBP27.86■■■□□ 2.05
MSX2-201ENST00000239243 ZSCAN31Q96LW9 406 aaPredicted RBP27.86■■■□□ 2.05
MSX2-201ENST00000239243 LAMB2P55268 1798 aa27.85■■■□□ 2.05
MSX2-201ENST00000239243 NHSQ6T4R5 1651 aa27.85■■■□□ 2.05
MSX2-201ENST00000239243 MROH5Q6ZUA9 1318 aa27.85■■■□□ 2.05
MSX2-201ENST00000239243 ADORA1P30542 326 aa27.84■■■□□ 2.05
MSX2-201ENST00000239243 ZMYM1Q5SVZ6 1142 aa27.84■■■□□ 2.05
MSX2-201ENST00000239243 VGLL2Q8N8G2 317 aa27.84■■■□□ 2.05
MSX2-201ENST00000239243 LINC00116Q8NCU8 138 aa27.84■■■□□ 2.05
MSX2-201ENST00000239243 CERKQ8TCT0 537 aa27.84■■■□□ 2.05
MSX2-201ENST00000239243 ZNF512BQ96KM6 892 aaPredicted RBP27.84■■■□□ 2.05
MSX2-201ENST00000239243 SH2B1Q9NRF2 756 aaPredicted RBP27.84■■■□□ 2.05
MSX2-201ENST00000239243 RTL9Q8NET4 1388 aa27.83■■■□□ 2.05
MSX2-201ENST00000239243 RNF113AO15541 343 aaKnown RBP27.83■■■□□ 2.05
MSX2-201ENST00000239243 PDE8BO95263 885 aa27.83■■■□□ 2.05
MSX2-201ENST00000239243 ZFYP08048 801 aaPredicted RBP27.83■■■□□ 2.05
MSX2-201ENST00000239243 MEX3CQ5U5Q3 659 aaKnown RBP27.83■■■□□ 2.05
MSX2-201ENST00000239243 ZSCAN21Q9Y5A6 473 aaPredicted RBP27.83■■■□□ 2.05
MSX2-201ENST00000239243 NTSR2O95665 410 aa27.83■■■□□ 2.05
MSX2-201ENST00000239243 CCDC152Q4G0S7 254 aa27.83■■■□□ 2.05
MSX2-201ENST00000239243 FKBP4Q02790 459 aaKnown RBP eCLIP27.82■■■□□ 2.04
MSX2-201ENST00000239243 PKP1Q13835 747 aa27.82■■■□□ 2.04
MSX2-201ENST00000239243 BLOC1S2Q6QNY1 142 aa27.82■■■□□ 2.04
MSX2-201ENST00000239243 DDX60Q8IY21 1712 aaKnown RBP27.82■■■□□ 2.04
MSX2-201ENST00000239243 BTAF1O14981 1849 aa27.82■■■□□ 2.04
MSX2-201ENST00000239243 HCLS1P14317 486 aaPredicted RBP27.82■■■□□ 2.04
MSX2-201ENST00000239243 ANKRD1Q15327 319 aa27.82■■■□□ 2.04
MSX2-201ENST00000239243 SEC62Q99442 399 aaKnown RBP27.82■■■□□ 2.04
MSX2-201ENST00000239243 RC3H1Q5TC82 1133 aaKnown RBP27.81■■■□□ 2.04
MSX2-201ENST00000239243 DSCC1Q9BVC3 393 aa27.81■■■□□ 2.04
MSX2-201ENST00000239243 ALDH8A1Q9H2A2 487 aaPredicted RBP27.81■■■□□ 2.04
MSX2-201ENST00000239243 CPA1P15085 419 aa27.8■■■□□ 2.04
MSX2-201ENST00000239243 CCDC129Q6ZRS4 1044 aa27.8■■■□□ 2.04
MSX2-201ENST00000239243 FAM177BA6PVY3 158 aa27.79■■■□□ 2.04
MSX2-201ENST00000239243 PUM3Q15397 648 aaKnown RBP27.79■■■□□ 2.04
MSX2-201ENST00000239243 GJD4Q96KN9 370 aaPredicted RBP27.79■■■□□ 2.04
MSX2-201ENST00000239243 ZDHHC9Q9Y397 364 aa27.79■■■□□ 2.04
MSX2-201ENST00000239243 MPHOSPH8Q99549 860 aa27.79■■■□□ 2.04
MSX2-201ENST00000239243 BRD1O95696 1058 aa27.78■■■□□ 2.04
MSX2-201ENST00000239243 RPS6KB1P23443 525 aa27.78■■■□□ 2.04
MSX2-201ENST00000239243 LPIN2Q92539 896 aa27.78■■■□□ 2.04
MSX2-201ENST00000239243 SCN7AQ01118 1682 aa27.77■■■□□ 2.04
MSX2-201ENST00000239243 ARAP2Q8WZ64 1704 aa27.77■■■□□ 2.04
MSX2-201ENST00000239243 CHGBP05060 677 aa27.76■■■□□ 2.04
MSX2-201ENST00000239243 TTF1Q15361 905 aaPredicted RBP27.76■■■□□ 2.04
MSX2-201ENST00000239243 MAST3O60307 1309 aa27.76■■■□□ 2.03
MSX2-201ENST00000239243 UQCRFS1P1P0C7P4 283 aa27.76■■■□□ 2.03
MSX2-201ENST00000239243 WDR33Q9C0J8 1336 aaKnown RBP27.75■■■□□ 2.03
MSX2-201ENST00000239243 IGHMBP2P38935 993 aaKnown RBP27.75■■■□□ 2.03
MSX2-201ENST00000239243 ZAP70P43403 619 aa27.75■■■□□ 2.03
MSX2-201ENST00000239243 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.75■■■□□ 2.03
MSX2-201ENST00000239243 SCARF1Q14162 830 aa27.75■■■□□ 2.03
MSX2-201ENST00000239243 ZSCAN25Q6NSZ9 544 aa27.75■■■□□ 2.03
MSX2-201ENST00000239243 RPS6KA4O75676 772 aa27.74■■■□□ 2.03
MSX2-201ENST00000239243 SLC5A1P13866 664 aa27.74■■■□□ 2.03
MSX2-201ENST00000239243 MCTP1Q6DN14 999 aa27.74■■■□□ 2.03
MSX2-201ENST00000239243 NEK1Q96PY6 1258 aa27.74■■■□□ 2.03
MSX2-201ENST00000239243 SMC3Q9UQE7 1217 aa27.74■■■□□ 2.03
MSX2-201ENST00000239243 AFF2P51816 1311 aa27.74■■■□□ 2.03
MSX2-201ENST00000239243 FGFR2P21802 821 aa27.73■■■□□ 2.03
MSX2-201ENST00000239243 CYP21A2P08686 494 aa27.73■■■□□ 2.03
MSX2-201ENST00000239243 HMGB1P09429 215 aaKnown RBP27.73■■■□□ 2.03
MSX2-201ENST00000239243 ARID4AP29374 1257 aaPredicted RBP27.73■■■□□ 2.03
MSX2-201ENST00000239243 MCAMP43121 646 aa27.73■■■□□ 2.03
MSX2-201ENST00000239243 MYH7P12883 1935 aa27.73■■■□□ 2.03
MSX2-201ENST00000239243 APPBP2Q92624 585 aa27.72■■■□□ 2.03
MSX2-201ENST00000239243 AKAP11Q9UKA4 1901 aa27.72■■■□□ 2.03
MSX2-201ENST00000239243 HSPD1P10809 573 aaKnown RBP27.72■■■□□ 2.03
MSX2-201ENST00000239243 CCDC102BQ68D86 513 aa27.72■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms