RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 MTERF4Q7Z6M4 381 aaKnown RBP22.11■■□□□ 1.13
CPSF3-201ENST00000238112 CLSTN2Q9H4D0 955 aa22.11■■□□□ 1.13
CPSF3-201ENST00000238112 HMGB1P09429 215 aaKnown RBP22.11■■□□□ 1.13
CPSF3-201ENST00000238112 CASP7P55210 303 aa22.11■■□□□ 1.13
CPSF3-201ENST00000238112 ZSCAN16Q9H4T2 348 aaPredicted RBP22.11■■□□□ 1.13
CPSF3-201ENST00000238112 SH3TC1Q8TE82 1336 aa22.11■■□□□ 1.13
CPSF3-201ENST00000238112 ABCC6O95255 1503 aa22.1■■□□□ 1.13
CPSF3-201ENST00000238112 RESTQ13127 1097 aa22.1■■□□□ 1.13
CPSF3-201ENST00000238112 DDX11Q96FC9 970 aa22.1■■□□□ 1.13
CPSF3-201ENST00000238112 ANO6Q4KMQ2 910 aa22.09■■□□□ 1.13
CPSF3-201ENST00000238112 LUZP1Q86V48 1076 aa22.09■■□□□ 1.13
CPSF3-201ENST00000238112 PLEKHG2Q9H7P9 1386 aa22.09■■□□□ 1.13
CPSF3-201ENST00000238112 NEUROD6Q96NK8 337 aa22.09■■□□□ 1.13
CPSF3-201ENST00000238112 LRRC2Q9BYS8 371 aa22.09■■□□□ 1.13
CPSF3-201ENST00000238112 CFAP45Q9UL16 551 aa22.09■■□□□ 1.13
CPSF3-201ENST00000238112 ARFGEF2Q9Y6D5 1785 aa22.09■■□□□ 1.13
CPSF3-201ENST00000238112 ATF3P18847 181 aa22.08■■□□□ 1.13
CPSF3-201ENST00000238112 SCRN1Q12765 414 aa22.08■■□□□ 1.13
CPSF3-201ENST00000238112 LLPHQ9BRT6 129 aaKnown RBP22.08■■□□□ 1.13
CPSF3-201ENST00000238112 NR1I2O75469 434 aa22.08■■□□□ 1.12
CPSF3-201ENST00000238112 CHRNA2Q15822 529 aa22.08■■□□□ 1.12
CPSF3-201ENST00000238112 RBM43Q6ZSC3 357 aaKnown RBP22.08■■□□□ 1.12
CPSF3-201ENST00000238112 KIAA1524Q8TCG1 905 aa22.08■■□□□ 1.12
CPSF3-201ENST00000238112 DDX17Q92841 729 aaKnown RBP22.08■■□□□ 1.12
CPSF3-201ENST00000238112 PGBD1Q96JS3 809 aa22.08■■□□□ 1.12
CPSF3-201ENST00000238112 KCNF1Q9H3M0 494 aa22.08■■□□□ 1.12
CPSF3-201ENST00000238112 CBX8Q9HC52 389 aa22.08■■□□□ 1.12
CPSF3-201ENST00000238112 PALLDQ8WX93 1383 aa22.07■■□□□ 1.12
CPSF3-201ENST00000238112 GOLIM4O00461 696 aa22.07■■□□□ 1.12
CPSF3-201ENST00000238112 VSIG10Q8N0Z9 540 aa22.07■■□□□ 1.12
CPSF3-201ENST00000238112 HELLSQ9NRZ9 838 aa22.07■■□□□ 1.12
CPSF3-201ENST00000238112 PAG1Q9NWQ8 432 aa22.07■■□□□ 1.12
CPSF3-201ENST00000238112 FOXO4P98177 505 aa22.07■■□□□ 1.12
CPSF3-201ENST00000238112 DHX32Q7L7V1 743 aaKnown RBP22.07■■□□□ 1.12
CPSF3-201ENST00000238112 CABLES1Q8TDN4 633 aa22.07■■□□□ 1.12
CPSF3-201ENST00000238112 PFKFB2O60825 505 aa22.06■■□□□ 1.12
CPSF3-201ENST00000238112 STOX1Q6ZVD7 989 aa22.06■■□□□ 1.12
CPSF3-201ENST00000238112 H7C1W4 665 aa22.06■■□□□ 1.12
CPSF3-201ENST00000238112 SMARCC2Q8TAQ2 1214 aa22.06■■□□□ 1.12
CPSF3-201ENST00000238112 DSCC1Q9BVC3 393 aa22.06■■□□□ 1.12
CPSF3-201ENST00000238112 PYCARDQ9ULZ3 195 aa22.06■■□□□ 1.12
CPSF3-201ENST00000238112 KIF3AQ9Y496 699 aa22.06■■□□□ 1.12
CPSF3-201ENST00000238112 CWC25Q9NXE8 425 aaPredicted RBP22.05■■□□□ 1.12
CPSF3-201ENST00000238112 ATG9AQ7Z3C6 839 aa22.05■■□□□ 1.12
CPSF3-201ENST00000238112 GPR108Q9NPR9 543 aa22.05■■□□□ 1.12
CPSF3-201ENST00000238112 IL15P40933 162 aaPredicted RBP22.04■■□□□ 1.12
CPSF3-201ENST00000238112 NAA16Q6N069 864 aaPredicted RBP22.03■■□□□ 1.12
CPSF3-201ENST00000238112 TICAM2Q86XR7 235 aa22.03■■□□□ 1.12
CPSF3-201ENST00000238112 NSUN7Q8NE18 718 aaKnown RBP22.03■■□□□ 1.12
CPSF3-201ENST00000238112 COL18A1P39060 1754 aa22.03■■□□□ 1.12
CPSF3-201ENST00000238112 ZNF165P49910 485 aa22.03■■□□□ 1.12
CPSF3-201ENST00000238112 TIMM10P62072 90 aa22.03■■□□□ 1.12
CPSF3-201ENST00000238112 DRC7Q8IY82 874 aa22.03■■□□□ 1.12
CPSF3-201ENST00000238112 ADAMTSL3P82987 1691 aa22.03■■□□□ 1.12
CPSF3-201ENST00000238112 NBPF26B4DH59 902 aa22.02■■□□□ 1.12
CPSF3-201ENST00000238112 PTGS1P23219 599 aa22.02■■□□□ 1.12
CPSF3-201ENST00000238112 CEBPZQ03701 1054 aaKnown RBP22.02■■□□□ 1.12
CPSF3-201ENST00000238112 APOBRQ0VD83 1088 aa22.02■■□□□ 1.12
CPSF3-201ENST00000238112 CHAF1AQ13111 956 aaPredicted RBP22.02■■□□□ 1.12
CPSF3-201ENST00000238112 ZMYM1Q5SVZ6 1142 aa22.02■■□□□ 1.12
CPSF3-201ENST00000238112 NBPF14Q5TI25 921 aa22.02■■□□□ 1.12
CPSF3-201ENST00000238112 NBPF10Q6P3W6 841 aaKnown RBP22.02■■□□□ 1.12
CPSF3-201ENST00000238112 NBPF15Q8N660 670 aa22.02■■□□□ 1.12
CPSF3-201ENST00000238112 TRIM5Q9C035 493 aa22.02■■□□□ 1.12
CPSF3-201ENST00000238112 PTPDC1A2A3K4 754 aa22.02■■□□□ 1.12
CPSF3-201ENST00000238112 GTF2F1P35269 517 aaKnown RBP eCLIP22.02■■□□□ 1.12
CPSF3-201ENST00000238112 TDRD7Q8NHU6 1098 aaKnown RBP22.02■■□□□ 1.12
CPSF3-201ENST00000238112 LAMB4A4D0S4 1761 aa22.02■■□□□ 1.11
CPSF3-201ENST00000238112 PKD1L3Q7Z443 1732 aa22.01■■□□□ 1.11
CPSF3-201ENST00000238112 CAVIN2O95810 425 aa22.01■■□□□ 1.11
CPSF3-201ENST00000238112 FOSBP53539 338 aa22.01■■□□□ 1.11
CPSF3-201ENST00000238112 SLFNL1Q499Z3 407 aa22.01■■□□□ 1.11
CPSF3-201ENST00000238112 DNAJC25Q9H1X3 360 aa22.01■■□□□ 1.11
CPSF3-201ENST00000238112 TTLL7Q6ZT98 887 aa22.01■■□□□ 1.11
CPSF3-201ENST00000238112 NAP1L2Q9ULW6 460 aaPredicted RBP22.01■■□□□ 1.11
CPSF3-201ENST00000238112 IFIT1P09914 478 aaKnown RBP22■■□□□ 1.11
CPSF3-201ENST00000238112 HSPD1P10809 573 aaKnown RBP22■■□□□ 1.11
CPSF3-201ENST00000238112 EXOSC10Q01780 885 aaKnown RBP22■■□□□ 1.11
CPSF3-201ENST00000238112 E7EWF7 191 aa22■■□□□ 1.11
CPSF3-201ENST00000238112 EYA2O00167 538 aa22■■□□□ 1.11
CPSF3-201ENST00000238112 ZNF75DP51815 510 aa22■■□□□ 1.11
CPSF3-201ENST00000238112 CCT2P78371 535 aaKnown RBP22■■□□□ 1.11
CPSF3-201ENST00000238112 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22■■□□□ 1.11
CPSF3-201ENST00000238112 TNS3Q68CZ2 1445 aa21.99■■□□□ 1.11
CPSF3-201ENST00000238112 CTDNEP1O95476 244 aa21.99■■□□□ 1.11
CPSF3-201ENST00000238112 CCDC186Q7Z3E2 898 aa21.99■■□□□ 1.11
CPSF3-201ENST00000238112 PLA2G4DQ86XP0 818 aa21.99■■□□□ 1.11
CPSF3-201ENST00000238112 AGXT2Q9BYV1 514 aa21.99■■□□□ 1.11
CPSF3-201ENST00000238112 GLI3P10071 1580 aa21.99■■□□□ 1.11
CPSF3-201ENST00000238112 RNF113AO15541 343 aaKnown RBP21.98■■□□□ 1.11
CPSF3-201ENST00000238112 LRRC24Q50LG9 513 aa21.98■■□□□ 1.11
CPSF3-201ENST00000238112 CHMP4CQ96CF2 233 aa21.98■■□□□ 1.11
CPSF3-201ENST00000238112 ZNF396Q96N95 335 aaPredicted RBP21.98■■□□□ 1.11
CPSF3-201ENST00000238112 MAST3O60307 1309 aa21.98■■□□□ 1.11
CPSF3-201ENST00000238112 CTAGE5O15320 804 aa21.98■■□□□ 1.11
CPSF3-201ENST00000238112 ADD1P35611 737 aaKnown RBP21.98■■□□□ 1.11
CPSF3-201ENST00000238112 CCDC191Q8NCU4 936 aa21.98■■□□□ 1.11
CPSF3-201ENST00000238112 ZBTB3Q9H5J0 574 aa21.98■■□□□ 1.11
CPSF3-201ENST00000238112 RCOR1Q9UKL0 485 aa21.98■■□□□ 1.11
CPSF3-201ENST00000238112 A0A1B0GUL7 405 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms