RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 BICDL1Q6ZP65 573 aa24.57■■□□□ 1.52
SNX3-201ENST00000230085 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.57■■□□□ 1.523e-7■□□□□ 10
SNX3-201ENST00000230085 RAD50Q92878 1312 aa24.57■■□□□ 1.52
SNX3-201ENST00000230085 SSH3Q8TE77 659 aa24.56■■□□□ 1.52
SNX3-201ENST00000230085 ZNF652Q9Y2D9 606 aa24.56■■□□□ 1.52
SNX3-201ENST00000230085 MAP3K2Q9Y2U5 619 aa24.56■■□□□ 1.52
SNX3-201ENST00000230085 ADCY9O60503 1353 aa24.56■■□□□ 1.52
SNX3-201ENST00000230085 F6X3S4 739 aa24.55■■□□□ 1.52
SNX3-201ENST00000230085 PDIA4P13667 645 aaKnown RBP24.55■■□□□ 1.52
SNX3-201ENST00000230085 SMAP1Q8IYB5 467 aaPredicted RBP24.55■■□□□ 1.52
SNX3-201ENST00000230085 TTC14Q96N46 770 aa24.55■■□□□ 1.52
SNX3-201ENST00000230085 ANO2Q9NQ90 1003 aa24.55■■□□□ 1.52
SNX3-201ENST00000230085 EXOC6BQ9Y2D4 811 aa24.55■■□□□ 1.52
SNX3-201ENST00000230085 APBB1O00213 710 aa24.54■■□□□ 1.52
SNX3-201ENST00000230085 NFIXQ14938 502 aa24.54■■□□□ 1.52
SNX3-201ENST00000230085 USP48Q86UV5 1035 aa24.54■■□□□ 1.52
SNX3-201ENST00000230085 UBE2HP62256 183 aa24.54■■□□□ 1.52
SNX3-201ENST00000230085 ARFGEF2Q9Y6D5 1785 aa24.53■■□□□ 1.52
SNX3-201ENST00000230085 TM4SF1P30408 202 aa24.53■■□□□ 1.52
SNX3-201ENST00000230085 ATP6V1DQ9Y5K8 247 aa24.53■■□□□ 1.52
SNX3-201ENST00000230085 RGL2O15211 777 aa24.52■■□□□ 1.52
SNX3-201ENST00000230085 MMP10P09238 476 aa24.52■■□□□ 1.52
SNX3-201ENST00000230085 GPTP24298 496 aa24.52■■□□□ 1.52
SNX3-201ENST00000230085 TCIRG1Q13488 830 aa24.52■■□□□ 1.52
SNX3-201ENST00000230085 POLA2Q14181 598 aa24.52■■□□□ 1.52
SNX3-201ENST00000230085 NIP7Q9Y221 180 aaKnown RBP eCLIP24.52■■□□□ 1.52
SNX3-201ENST00000230085 PNMA6EA0A0J9YXQ4 647 aa24.52■■□□□ 1.52
SNX3-201ENST00000230085 TPM3P06753 285 aa24.52■■□□□ 1.52
SNX3-201ENST00000230085 CHAMP1Q96JM3 812 aa24.52■■□□□ 1.52
SNX3-201ENST00000230085 FAM13BQ9NYF5 915 aa24.52■■□□□ 1.52
SNX3-201ENST00000230085 ATP5J2-PTCD1G3V325 749 aa24.51■■□□□ 1.51
SNX3-201ENST00000230085 SGSM2O43147 1006 aa24.51■■□□□ 1.51
SNX3-201ENST00000230085 ZSCAN22P10073 491 aaPredicted RBP24.51■■□□□ 1.51
SNX3-201ENST00000230085 DNAAF4Q8WXU2 420 aa24.51■■□□□ 1.51
SNX3-201ENST00000230085 SETDB2Q96T68 719 aa24.51■■□□□ 1.51
SNX3-201ENST00000230085 MYD88Q99836 296 aa24.51■■□□□ 1.51
SNX3-201ENST00000230085 METTL22Q9BUU2 404 aaPredicted RBP24.51■■□□□ 1.51
SNX3-201ENST00000230085 DDR1Q08345 913 aa24.5■■□□□ 1.51
SNX3-201ENST00000230085 ZNF34Q8IZ26 560 aa24.5■■□□□ 1.51
SNX3-201ENST00000230085 RNF214Q8ND24 703 aa24.5■■□□□ 1.51
SNX3-201ENST00000230085 FUCA2Q9BTY2 467 aa24.5■■□□□ 1.51
SNX3-201ENST00000230085 SPON1Q9HCB6 807 aa24.5■■□□□ 1.51
SNX3-201ENST00000230085 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.5■■□□□ 1.51
SNX3-201ENST00000230085 UBN2Q6ZU65 1347 aa24.5■■□□□ 1.51
SNX3-201ENST00000230085 GADD45BO75293 160 aaPredicted RBP24.49■■□□□ 1.51
SNX3-201ENST00000230085 PTMAP06454 111 aaKnown RBP24.49■■□□□ 1.51
SNX3-201ENST00000230085 PTGER2P43116 358 aa24.49■■□□□ 1.51
SNX3-201ENST00000230085 HSP90AB3PQ58FF7 597 aa24.49■■□□□ 1.51
SNX3-201ENST00000230085 SLC4A10Q6U841 1118 aa24.49■■□□□ 1.51
SNX3-201ENST00000230085 SGIP1Q9BQI5 828 aa24.49■■□□□ 1.51
SNX3-201ENST00000230085 RBM10P98175 930 aaKnown RBP24.49■■□□□ 1.51
SNX3-201ENST00000230085 KCNB2Q92953 911 aa24.49■■□□□ 1.51
SNX3-201ENST00000230085 POLRMTO00411 1230 aaKnown RBP24.48■■□□□ 1.51
SNX3-201ENST00000230085 FAM177BA6PVY3 158 aa24.47■■□□□ 1.51
SNX3-201ENST00000230085 TRIM6-TRIM34B2RNG4 842 aa24.47■■□□□ 1.51
SNX3-201ENST00000230085 PI4K2BQ8TCG2 481 aa24.47■■□□□ 1.51
SNX3-201ENST00000230085 COL24A1Q17RW2 1714 aa24.47■■□□□ 1.51
SNX3-201ENST00000230085 ISCA1Q9BUE6 129 aa24.47■■□□□ 1.51
SNX3-201ENST00000230085 CCDC94Q9BW85 323 aaPredicted RBP24.47■■□□□ 1.51
SNX3-201ENST00000230085 TM6SF1Q9BZW5 370 aa24.47■■□□□ 1.51
SNX3-201ENST00000230085 LSG1Q9H089 658 aaKnown RBP24.47■■□□□ 1.51
SNX3-201ENST00000230085 USP44Q9H0E7 712 aa24.47■■□□□ 1.51
SNX3-201ENST00000230085 LIMCH1Q9UPQ0 1083 aa24.47■■□□□ 1.51
SNX3-201ENST00000230085 ANKRD36CQ5JPF3 1778 aa24.46■■□□□ 1.51
SNX3-201ENST00000230085 IGKV5-2P06315 115 aa24.46■■□□□ 1.51
SNX3-201ENST00000230085 POLD1P28340 1107 aa24.46■■□□□ 1.51
SNX3-201ENST00000230085 NEXNQ0ZGT2 675 aa24.46■■□□□ 1.51
SNX3-201ENST00000230085 NOLC1Q14978 699 aaKnown RBP eCLIP24.46■■□□□ 1.51
SNX3-201ENST00000230085 CWF19L2Q2TBE0 894 aaKnown RBP24.46■■□□□ 1.51
SNX3-201ENST00000230085 RILPL2Q969X0 211 aa24.46■■□□□ 1.51
SNX3-201ENST00000230085 USP25Q9UHP3 1055 aa24.46■■□□□ 1.51
SNX3-201ENST00000230085 PARP3Q9Y6F1 533 aa24.46■■□□□ 1.51
SNX3-201ENST00000230085 CARMIL3Q8ND23 1372 aa24.45■■□□□ 1.5
SNX3-201ENST00000230085 SERPINB2P05120 415 aa24.45■■□□□ 1.5
SNX3-201ENST00000230085 SUSD4Q5VX71 490 aa24.45■■□□□ 1.5
SNX3-201ENST00000230085 NLRP10Q86W26 655 aa24.45■■□□□ 1.5
SNX3-201ENST00000230085 PRDM4Q9UKN5 801 aa24.45■■□□□ 1.5
SNX3-201ENST00000230085 SNX14Q9Y5W7 946 aa24.45■■□□□ 1.5
SNX3-201ENST00000230085 STX6O43752 255 aa24.44■■□□□ 1.5
SNX3-201ENST00000230085 KDM4AO75164 1064 aa24.44■■□□□ 1.5
SNX3-201ENST00000230085 BEND3Q5T5X7 828 aa24.44■■□□□ 1.5
SNX3-201ENST00000230085 UPF3BQ9BZI7 483 aaKnown RBP24.44■■□□□ 1.5
SNX3-201ENST00000230085 LRRFIP2Q9Y608 721 aaKnown RBP24.44■■□□□ 1.5
SNX3-201ENST00000230085 F13A1P00488 732 aa24.44■■□□□ 1.5
SNX3-201ENST00000230085 TTC41PQ6P2S7 1318 aa24.43■■□□□ 1.5
SNX3-201ENST00000230085 CCDC171Q6TFL3 1326 aa24.43■■□□□ 1.5
SNX3-201ENST00000230085 TRIM28Q13263 835 aaKnown RBP24.43■■□□□ 1.5
SNX3-201ENST00000230085 FOXD4L5Q5VV16 416 aaPredicted RBP24.43■■□□□ 1.5
SNX3-201ENST00000230085 NBPF5PQ86XG9 351 aaPredicted RBP24.43■■□□□ 1.5
SNX3-201ENST00000230085 FOXD4L4Q8WXT5 416 aaPredicted RBP24.43■■□□□ 1.5
SNX3-201ENST00000230085 ZSCAN31Q96LW9 406 aaPredicted RBP24.43■■□□□ 1.5
SNX3-201ENST00000230085 NEURL1BA8MQ27 555 aa24.42■■□□□ 1.5
SNX3-201ENST00000230085 ADCY5O95622 1261 aa24.42■■□□□ 1.5
SNX3-201ENST00000230085 UBTFL1P0CB47 393 aaPredicted RBP24.42■■□□□ 1.5
SNX3-201ENST00000230085 PARP10Q53GL7 1025 aa24.42■■□□□ 1.5
SNX3-201ENST00000230085 HSP90AB4PQ58FF6 505 aa24.42■■□□□ 1.5
SNX3-201ENST00000230085 TSHZ3Q63HK5 1081 aa24.42■■□□□ 1.5
SNX3-201ENST00000230085 LINS1Q8NG48 757 aa24.42■■□□□ 1.5
SNX3-201ENST00000230085 KIF1BPQ96EK5 621 aa24.42■■□□□ 1.5
SNX3-201ENST00000230085 SH2B1Q9NRF2 756 aaPredicted RBP24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms