RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 CDCA7Q9BWT1 371 aaPredicted RBP21.25■□□□□ 0.99
CLIP2-201ENST00000223398 ZNF408Q9H9D4 720 aa21.25■□□□□ 0.99
CLIP2-201ENST00000223398 Q6ZUG5 572 aa21.25■□□□□ 0.99
CLIP2-201ENST00000223398 NUP88Q99567 741 aaPredicted RBP21.25■□□□□ 0.99
CLIP2-201ENST00000223398 APBA3O96018 575 aa21.25■□□□□ 0.99
CLIP2-201ENST00000223398 SFPQP23246 707 aaKnown RBP eCLIP21.24■□□□□ 0.99
CLIP2-201ENST00000223398 SAP30BPQ9UHR5 308 aaKnown RBP21.24■□□□□ 0.99
CLIP2-201ENST00000223398 HDAC1Q13547 482 aaPredicted RBP21.24■□□□□ 0.99
CLIP2-201ENST00000223398 POLR3AO14802 1390 aaPredicted RBP21.24■□□□□ 0.99
CLIP2-201ENST00000223398 TOP1P11387 765 aaKnown RBP21.24■□□□□ 0.99
CLIP2-201ENST00000223398 G2E3Q7L622 706 aa21.24■□□□□ 0.99
CLIP2-201ENST00000223398 PUF60Q9UHX1 559 aaKnown RBP21.23■□□□□ 0.99
CLIP2-201ENST00000223398 NBPF7P0C2Y1 421 aaPredicted RBP21.23■□□□□ 0.99
CLIP2-201ENST00000223398 TNPO1Q92973 898 aaKnown RBP21.23■□□□□ 0.99
CLIP2-201ENST00000223398 DDX21Q9NR30 783 aaKnown RBP eCLIP21.23■□□□□ 0.99
CLIP2-201ENST00000223398 RNF113AO15541 343 aaKnown RBP21.23■□□□□ 0.99
CLIP2-201ENST00000223398 TBCAO75347 108 aaKnown RBP21.23■□□□□ 0.99
CLIP2-201ENST00000223398 VPS36Q86VN1 386 aa21.23■□□□□ 0.99
CLIP2-201ENST00000223398 PRC1O43663 620 aa21.23■□□□□ 0.99
CLIP2-201ENST00000223398 CETN2P41208 172 aa21.23■□□□□ 0.99
CLIP2-201ENST00000223398 ESYT1Q9BSJ8 1104 aa21.23■□□□□ 0.99
CLIP2-201ENST00000223398 CALM1P0DP23 149 aa21.22■□□□□ 0.99
CLIP2-201ENST00000223398 CALM2P0DP24 149 aa21.22■□□□□ 0.99
CLIP2-201ENST00000223398 CALM3P0DP25 149 aa21.22■□□□□ 0.99
CLIP2-201ENST00000223398 ITGA6P23229 1130 aa21.22■□□□□ 0.99
CLIP2-201ENST00000223398 PPM1FP49593 454 aaPredicted RBP21.22■□□□□ 0.99
CLIP2-201ENST00000223398 TAF3Q5VWG9 929 aa21.22■□□□□ 0.99
CLIP2-201ENST00000223398 CCDC178Q5BJE1 867 aa21.22■□□□□ 0.99
CLIP2-201ENST00000223398 TMTC2Q8N394 836 aa21.22■□□□□ 0.99
CLIP2-201ENST00000223398 CEP85Q6P2H3 762 aa21.21■□□□□ 0.99
CLIP2-201ENST00000223398 TMX1Q9H3N1 280 aa21.21■□□□□ 0.99
CLIP2-201ENST00000223398 DRC1Q96MC2 740 aa21.21■□□□□ 0.99
CLIP2-201ENST00000223398 AFMP43652 599 aa21.21■□□□□ 0.99
CLIP2-201ENST00000223398 CETN1Q12798 172 aa21.21■□□□□ 0.99
CLIP2-201ENST00000223398 PLCG2P16885 1265 aa21.21■□□□□ 0.99
CLIP2-201ENST00000223398 KLHDC4Q8TBB5 520 aa21.21■□□□□ 0.99
CLIP2-201ENST00000223398 CTNNBL1Q8WYA6 563 aaPredicted RBP21.2■□□□□ 0.98
CLIP2-201ENST00000223398 TIMM10P62072 90 aa21.2■□□□□ 0.98
CLIP2-201ENST00000223398 RBM10P98175 930 aaKnown RBP21.2■□□□□ 0.98
CLIP2-201ENST00000223398 RXRAP19793 462 aa21.2■□□□□ 0.98
CLIP2-201ENST00000223398 CCDC148Q8NFR7 591 aa21.2■□□□□ 0.98
CLIP2-201ENST00000223398 ZNF594Q96JF6 807 aaPredicted RBP21.2■□□□□ 0.98
CLIP2-201ENST00000223398 TMX3Q96JJ7 454 aa21.2■□□□□ 0.98
CLIP2-201ENST00000223398 PUS7Q96PZ0 661 aaKnown RBP21.2■□□□□ 0.98
CLIP2-201ENST00000223398 ZFYVE9O95405 1425 aa21.2■□□□□ 0.98
CLIP2-201ENST00000223398 SH3TC1Q8TE82 1336 aa21.2■□□□□ 0.98
CLIP2-201ENST00000223398 STXBP4Q6ZWJ1 553 aa21.2■□□□□ 0.98
CLIP2-201ENST00000223398 DNAJC10Q8IXB1 793 aa21.2■□□□□ 0.98
CLIP2-201ENST00000223398 RBM25P49756 843 aaKnown RBP21.19■□□□□ 0.98
CLIP2-201ENST00000223398 ERMNQ8TAM6 284 aa21.19■□□□□ 0.98
CLIP2-201ENST00000223398 ZKSCAN3Q9BRR0 538 aa21.19■□□□□ 0.98
CLIP2-201ENST00000223398 H0YHG0 523 aa21.19■□□□□ 0.98
CLIP2-201ENST00000223398 RAB3GAP1Q15042 981 aa21.19■□□□□ 0.98
CLIP2-201ENST00000223398 SP4Q02446 784 aa21.19■□□□□ 0.98
CLIP2-201ENST00000223398 IQCEQ6IPM2 695 aa21.19■□□□□ 0.98
CLIP2-201ENST00000223398 PLBD2Q8NHP8 589 aa21.19■□□□□ 0.98
CLIP2-201ENST00000223398 RLBP1P12271 317 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 SBNO1A3KN83 1393 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 GNAQP50148 359 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 MSL1Q68DK7 614 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 CCDC97Q96F63 343 aaPredicted RBP21.18■□□□□ 0.98
CLIP2-201ENST00000223398 CCDC87Q9NVE4 849 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 CTAGE5O15320 804 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 TNNI2P48788 182 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 PPP4R3BQ5MIZ7 849 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 CCDC102BQ68D86 513 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 PARD3Q8TEW0 1356 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 TAF5LO75529 589 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 TTC16Q8NEE8 873 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 FERMT2Q96AC1 680 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 TSPYL1Q9H0U9 437 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 ATP7AQ04656 1500 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 EIF2AK4Q9P2K8 1649 aaKnown RBP21.18■□□□□ 0.98
CLIP2-201ENST00000223398 PRKG1Q13976 671 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 VSIG10Q8N0Z9 540 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 SLC52A2Q9HAB3 445 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 CLIP2Q9UDT6 1046 aa21.18■□□□□ 0.98
CLIP2-201ENST00000223398 MBD4O95243 580 aa21.17■□□□□ 0.98
CLIP2-201ENST00000223398 LTKP29376 864 aa21.17■□□□□ 0.98
CLIP2-201ENST00000223398 ANAPC15P60006 121 aa21.17■□□□□ 0.98
CLIP2-201ENST00000223398 TEX11Q8IYF3 940 aa21.17■□□□□ 0.98
CLIP2-201ENST00000223398 EXOC1Q9NV70 894 aa21.17■□□□□ 0.98
CLIP2-201ENST00000223398 ZBTB21Q9ULJ3 1066 aa21.17■□□□□ 0.98
CLIP2-201ENST00000223398 MAPKBP1O60336 1514 aa21.17■□□□□ 0.98
CLIP2-201ENST00000223398 GNAT2P19087 354 aa21.17■□□□□ 0.98
CLIP2-201ENST00000223398 PARP10Q53GL7 1025 aa21.17■□□□□ 0.98
CLIP2-201ENST00000223398 DDX19AQ9NUU7 478 aaKnown RBP21.17■□□□□ 0.98
CLIP2-201ENST00000223398 MARCKSP29966 332 aaPredicted RBP21.16■□□□□ 0.98
CLIP2-201ENST00000223398 IL13P35225 146 aa21.16■□□□□ 0.98
CLIP2-201ENST00000223398 SPDYE3A6NKU9 549 aa21.16■□□□□ 0.98
CLIP2-201ENST00000223398 ERLIN1O75477 346 aa21.16■□□□□ 0.98
CLIP2-201ENST00000223398 HIBADHP31937 336 aaKnown RBP21.16■□□□□ 0.98
CLIP2-201ENST00000223398 H0YIN7 160 aa21.16■□□□□ 0.98
CLIP2-201ENST00000223398 CCDC174Q6PII3 467 aa21.16■□□□□ 0.98
CLIP2-201ENST00000223398 RRP36Q96EU6 259 aaKnown RBP21.16■□□□□ 0.98
CLIP2-201ENST00000223398 GGA1Q9UJY5 639 aa21.16■□□□□ 0.98
CLIP2-201ENST00000223398 STAT6P42226 847 aa21.16■□□□□ 0.98
CLIP2-201ENST00000223398 EIF6P56537 245 aaKnown RBP21.16■□□□□ 0.98
CLIP2-201ENST00000223398 LARGE2Q8N3Y3 721 aa21.16■□□□□ 0.98
CLIP2-201ENST00000223398 TRAF1Q13077 416 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms