RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 USPL1Q5W0Q7 1092 aa17.22■□□□□ 0.35
RTFDC1-201ENST00000023939 INTS4Q96HW7 963 aaKnown RBP17.22■□□□□ 0.35
RTFDC1-201ENST00000023939 TTC14Q96N46 770 aa17.22■□□□□ 0.35
RTFDC1-201ENST00000023939 RBM8AQ9Y5S9 174 aaKnown RBP17.22■□□□□ 0.35
RTFDC1-201ENST00000023939 DDX60Q8IY21 1712 aaKnown RBP17.22■□□□□ 0.35
RTFDC1-201ENST00000023939 MROH5Q6ZUA9 1318 aa17.22■□□□□ 0.35
RTFDC1-201ENST00000023939 LY75O60449 1722 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 TSGA10IPQ3SY00 556 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 MCMDC2Q4G0Z9 681 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 DDX46Q7L014 1031 aaKnown RBP17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 CNNM1Q9NRU3 951 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 HELLSQ9NRZ9 838 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 GOLIM4O00461 696 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 PDE8BO95263 885 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 ZKSCAN1P17029 563 aaPredicted RBP17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 MCM4P33991 863 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 CCDC152Q4G0S7 254 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 CREB3L3Q68CJ9 461 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 PRPF40BQ6NWY9 871 aaKnown RBP17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 CLEC17AQ6ZS10 378 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 UPF3BQ9BZI7 483 aaKnown RBP17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 HMG20BQ9P0W2 317 aa17.21■□□□□ 0.35
RTFDC1-201ENST00000023939 SBF2Q86WG5 1849 aa17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 HCLS1P14317 486 aaPredicted RBP17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 ADORA1P30542 326 aa17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 NUCB2P80303 420 aa17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 LRRFIP1Q32MZ4 808 aaKnown RBP17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 TTC39AQ5SRH9 613 aa17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 RNF20Q5VTR2 975 aa17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 ZNF589Q86UQ0 364 aaPredicted RBP17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 SEPT12Q8IYM1 358 aa17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 ZSWIM6Q9HCJ5 1215 aa17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 NARFQ9UHQ1 456 aa17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 CCNL1Q9UK58 526 aaPredicted RBP17.2■□□□□ 0.34
RTFDC1-201ENST00000023939 SSFA2P28290 1259 aa17.19■□□□□ 0.34
RTFDC1-201ENST00000023939 ZMYM1Q5SVZ6 1142 aa17.19■□□□□ 0.34
RTFDC1-201ENST00000023939 GORABQ5T7V8 394 aa17.19■□□□□ 0.34
RTFDC1-201ENST00000023939 FOXD4L1Q9NU39 408 aa17.19■□□□□ 0.34
RTFDC1-201ENST00000023939 NDUFB9Q9Y6M9 179 aa17.19■□□□□ 0.34
RTFDC1-201ENST00000023939 RPAP1Q9BWH6 1393 aaPredicted RBP17.19■□□□□ 0.34
RTFDC1-201ENST00000023939 SLC27A2O14975 620 aa17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 CYP2E1P05181 493 aaPredicted RBP17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 FGFR2P21802 821 aa17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 SLC10A5Q5PT55 438 aa17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 TNPO1Q92973 898 aaKnown RBP17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 BCL2L12Q9HB09 334 aa17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 RNF113AO15541 343 aaKnown RBP17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 ZFYP08048 801 aaPredicted RBP17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 PSMA5P28066 241 aa17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 PUM3Q15397 648 aaKnown RBP17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 VPS53Q5VIR6 699 aa17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 BCL11BQ9C0K0 894 aaPredicted RBP17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 U3KPZ7 1027 aaPredicted RBP17.18■□□□□ 0.34
RTFDC1-201ENST00000023939 KCNJ4P48050 445 aa17.17■□□□□ 0.34
RTFDC1-201ENST00000023939 SF3B3Q15393 1217 aaKnown RBP17.17■□□□□ 0.34
RTFDC1-201ENST00000023939 LPIN2Q92539 896 aa17.17■□□□□ 0.34
RTFDC1-201ENST00000023939 GBP4Q96PP9 640 aa17.17■□□□□ 0.34
RTFDC1-201ENST00000023939 ARAP2Q8WZ64 1704 aa17.17■□□□□ 0.34
RTFDC1-201ENST00000023939 DDX11L8A8MPP1 907 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 KCNQ4P56696 695 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 JAKMIP1Q96N16 626 aaKnown RBP17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 ALDH8A1Q9H2A2 487 aaPredicted RBP17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 CYP46A1Q9Y6A2 500 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 TAF1LQ8IZX4 1826 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 UQCRFS1P1P0C7P4 283 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 CASTP20810 708 aaKnown RBP17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 KRT32Q14532 448 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 ADCK5Q3MIX3 580 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 RUFY3Q7L099 469 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 ZGPATQ8N5A5 531 aaKnown RBP17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 DSCC1Q9BVC3 393 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 QTRT2Q9H974 415 aaKnown RBP17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 LIMCH1Q9UPQ0 1083 aa17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 RTCBQ9Y3I0 505 aaKnown RBP17.16■□□□□ 0.34
RTFDC1-201ENST00000023939 COL24A1Q17RW2 1714 aa17.15■□□□□ 0.34
RTFDC1-201ENST00000023939 FAM177BA6PVY3 158 aa17.15■□□□□ 0.34
RTFDC1-201ENST00000023939 GNPATO15228 680 aa17.15■□□□□ 0.34
RTFDC1-201ENST00000023939 ARID4AP29374 1257 aaPredicted RBP17.15■□□□□ 0.34
RTFDC1-201ENST00000023939 IGHMBP2P38935 993 aaKnown RBP17.15■□□□□ 0.34
RTFDC1-201ENST00000023939 AK2P54819 239 aa17.15■□□□□ 0.34
RTFDC1-201ENST00000023939 FAM182BQ5T319 152 aa17.15■□□□□ 0.34
RTFDC1-201ENST00000023939 MPHOSPH8Q99549 860 aa17.15■□□□□ 0.34
RTFDC1-201ENST00000023939 NYXQ9GZU5 481 aa17.15■□□□□ 0.34
RTFDC1-201ENST00000023939 PTMSP20962 102 aa17.14■□□□□ 0.33
RTFDC1-201ENST00000023939 SCARF1Q14162 830 aa17.14■□□□□ 0.33
RTFDC1-201ENST00000023939 CDC5LQ99459 802 aaKnown RBP17.14■□□□□ 0.33
RTFDC1-201ENST00000023939 SEC31BQ9NQW1 1179 aa17.14■□□□□ 0.33
RTFDC1-201ENST00000023939 PDRG1Q9NUG6 133 aa17.14■□□□□ 0.33
RTFDC1-201ENST00000023939 SLC5A1P13866 664 aa17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 FKBP4Q02790 459 aaKnown RBP eCLIP17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 ERFEQ4G0M1 354 aa17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 TBC1D9BQ66K14 1250 aa17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 ZSCAN31Q96LW9 406 aaPredicted RBP17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 SEC62Q99442 399 aaKnown RBP17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 C4BP0C0L5 1744 aa17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 MAST3O60307 1309 aa17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 ZPR1O75312 459 aa17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 CHGBP05060 677 aa17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 MCAMP43121 646 aa17.13■□□□□ 0.33
RTFDC1-201ENST00000023939 ZAP70P43403 619 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms