RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 KCNN2Q9H2S1 579 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 ZNF442Q9H7R0 627 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 CISD1Q9NZ45 108 aaKnown RBP15.9■□□□□ 0.14
CLN3-259ENST00000637551 ADAM18Q9Y3Q7 739 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 UGT2A1Q9Y4X1 527 aa15.9■□□□□ 0.14
CLN3-259ENST00000637551 A0A1W2PR80 420 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 SNAP29O95721 258 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 SERPINA5P05154 406 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 ZNF14P17017 642 aaPredicted RBP15.89■□□□□ 0.13
CLN3-259ENST00000637551 PCBD1P61457 104 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 CBX1P83916 185 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 AGAP6Q5VW22 663 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 ALKBH2Q6NS38 261 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 TMEM53Q6P2H8 277 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 PRSS57Q6UWY2 283 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 MDP1Q86V88 176 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 C1orf174Q8IYL3 243 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 AQP11Q8NBQ7 271 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 OR10G2Q8NGC3 310 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 GIPC3Q8TF64 312 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 TMEM171Q8WVE6 324 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 NABP1Q96AH0 204 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 ZNF701Q9NV72 531 aaPredicted RBP15.89■□□□□ 0.13
CLN3-259ENST00000637551 PLEKHA6Q9Y2H5 1048 aa15.89■□□□□ 0.13
CLN3-259ENST00000637551 OVOL3O00110 214 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 GNGT2O14610 69 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 ARHGEF9O43307 516 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 PLAUP00749 431 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 CST2P09228 141 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 BMP4P12644 408 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 ANXA8P13928 327 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 RAB1AP62820 205 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 ETFDHQ16134 617 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 SLC16A14Q7RTX9 510 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 IGFN1Q86VF2 1251 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 MEX3DQ86XN8 651 aaKnown RBP15.88■□□□□ 0.13
CLN3-259ENST00000637551 SKA3Q8IX90 412 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 PIAS4Q8N2W9 510 aaPredicted RBP15.88■□□□□ 0.13
CLN3-259ENST00000637551 LNX2Q8N448 690 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 OR9Q2Q8NGE9 314 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 SMAP2Q8WU79 429 aaPredicted RBP15.88■□□□□ 0.13
CLN3-259ENST00000637551 OSBPL10Q9BXB5 764 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 RACGAP1Q9H0H5 632 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 LIME1Q9H400 295 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 ATPIF1Q9UII2 106 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 POU2F3Q9UKI9 436 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 SPEF1Q9Y4P9 236 aa15.88■□□□□ 0.13
CLN3-259ENST00000637551 VSTM5A8MXK1 200 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 BHLHE40O14503 412 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 SLC2A10O95528 541 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 GASTP01350 101 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 HLA-HP01893 362 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 MSR1P21757 451 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 TTKP33981 857 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 CAPZA2P47755 286 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 RPS23P62266 143 aaKnown RBP15.87■□□□□ 0.13
CLN3-259ENST00000637551 LSM6P62312 80 aaKnown RBP15.87■□□□□ 0.13
CLN3-259ENST00000637551 SHEQ5VZ18 495 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 OR1J2Q8NGS2 313 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 NRGNQ92686 78 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 ERMAPQ96PL5 475 aaPredicted RBP15.87■□□□□ 0.13
CLN3-259ENST00000637551 IFT27Q9BW83 186 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 VNN3Q9NY84 501 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 IER3IP1Q9Y5U9 82 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 U3KQV3 271 aa15.87■□□□□ 0.13
CLN3-259ENST00000637551 USF3Q68DE3 2245 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 IGHV2OR16-5A0A0B4J2B6 119 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 ZNF503-AS2A6NEH8 195 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 ICMTO60725 284 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 SMPD2O60906 423 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 E2F6O75461 281 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 KHDRBS3O75525 346 aaKnown RBP15.86■□□□□ 0.13
CLN3-259ENST00000637551 MMP7P09237 267 aaPredicted RBP15.86■□□□□ 0.13
CLN3-259ENST00000637551 CD79AP11912 226 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 PCSK6P29122 969 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 NOS3P29474 1203 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 APOBEC3AP31941 199 aaPredicted RBP15.86■□□□□ 0.13
CLN3-259ENST00000637551 GIPRP48546 466 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 CENPAP49450 140 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 IDH3GP51553 393 aaPredicted RBP15.86■□□□□ 0.13
CLN3-259ENST00000637551 PLP2Q04941 152 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 FMODQ06828 376 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 KCNMB1Q16558 191 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 PGGHGQ32M88 737 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 SHQ1Q6PI26 577 aaKnown RBP15.86■□□□□ 0.13
CLN3-259ENST00000637551 UNQ6126/PRO20091Q6UXV3 157 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 JAZF1Q86VZ6 243 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 GLB1L2Q8IW92 636 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 FBXL14Q8N1E6 418 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 OR2T33Q8NG76 320 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 IPCEF1Q8WWN9 437 aaPredicted RBP15.86■□□□□ 0.13
CLN3-259ENST00000637551 UTP4Q969X6 686 aaKnown RBP15.86■□□□□ 0.13
CLN3-259ENST00000637551 SLCO4A1Q96BD0 722 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 BDH2Q9BUT1 245 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 TRAF4Q9BUZ4 470 aaPredicted RBP15.86■□□□□ 0.13
CLN3-259ENST00000637551 ZNF556Q9HAH1 456 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 CBLN4Q9NTU7 201 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 FKBP7Q9Y680 259 aa15.86■□□□□ 0.13
CLN3-259ENST00000637551 MAP1AP78559 2803 aaPredicted RBP15.86■□□□□ 0.13
CLN3-259ENST00000637551 ZNF469Q96JG9 3925 aaPredicted RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms