RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 C4orf36Q96KX1 117 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 BCL7BQ9BQE9 202 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 RNF122Q9H9V4 155 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 BABAM2Q9NXR7 383 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 KLHDC2Q9Y2U9 406 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 TMEM14AQ9Y6G1 99 aa16.34■□□□□ 0.21
CLN3-254ENST00000637050 GPR171O14626 319 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 MPZL1O95297 269 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 ALOX5APP20292 161 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 LAP3P28838 519 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 CAPZA2P47755 286 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 ENTPD1P49961 510 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 OR12D2P58182 307 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 CTF1Q16619 201 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 PCK2Q16822 640 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 TEX30Q5JUR7 227 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 PHYHD1Q5SRE7 291 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 C10orf128Q5T292 105 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 ZNF684Q5T5D7 378 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 AAED1Q7RTV5 226 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 PHC2Q8IXK0 858 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 C20orf196Q8IYI0 205 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 OR6N1Q8NGY5 312 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 OTOSQ8NHW6 89 aa16.33■□□□□ 0.2
CLN3-254ENST00000637050 MRPL48Q96GC5 212 aaKnown RBP16.33■□□□□ 0.2
CLN3-254ENST00000637050 J3QLW9 94 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 NOL3O60936 208 aaKnown RBP16.32■□□□□ 0.2
CLN3-254ENST00000637050 CRYABP02511 175 aaKnown RBP16.32■□□□□ 0.2
CLN3-254ENST00000637050 ZNF19P17023 458 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 ADAM8P78325 824 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 MEP1BQ16820 701 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 PLXDC2Q6UX71 529 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 VASH1Q7L8A9 365 aaPredicted RBP16.32■□□□□ 0.2
CLN3-254ENST00000637050 KLBQ86Z14 1044 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 SNX33Q8WV41 574 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 SARAFQ96BY9 339 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 TTTY10Q9BZA0 68 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 PRRG4Q9BZD6 226 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 BCO1Q9HAY6 547 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 NDUFB11Q9NX14 153 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 LAMP5Q9UJQ1 280 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 ZNF175Q9Y473 711 aa16.32■□□□□ 0.2
CLN3-254ENST00000637050 TRIM64BA6NI03 449 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 ZNF724A8MTY0 619 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 PRR32B1ATL7 298 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 PHYHO14832 338 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 SLC43A1O75387 559 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 PAX7P23759 505 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 GADD45AP24522 165 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 RPS27P42677 84 aaKnown RBP16.31■□□□□ 0.2
CLN3-254ENST00000637050 RNPS1Q15287 305 aaKnown RBP16.31■□□□□ 0.2
CLN3-254ENST00000637050 LINC00303Q3SY05 128 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 TP53I3Q53FA7 332 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 LIPKQ5VXJ0 399 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 OTPQ5XKR4 325 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 ADGRE4PQ86SQ3 457 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 ZCCHC14Q8WYQ9 949 aaKnown RBP16.31■□□□□ 0.2
CLN3-254ENST00000637050 TRIM36Q9NQ86 728 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 EMC3Q9P0I2 261 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 KCNG2Q9UJ96 466 aa16.31■□□□□ 0.2
CLN3-254ENST00000637050 MAGEB4O15481 346 aaPredicted RBP16.3■□□□□ 0.2
CLN3-254ENST00000637050 DNAJC13O75165 2243 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 ZNF823P16415 610 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 NR4A1P22736 598 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 KCNMB1Q16558 191 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 KCTD20Q7Z5Y7 419 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 ZNF454Q8N9F8 522 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 C11orf40Q8WZ69 217 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 UFD1Q92890 307 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 TUBD1Q9UJT1 453 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 NOSIPQ9Y314 301 aaKnown RBP16.3■□□□□ 0.2
CLN3-254ENST00000637050 UGT2A1Q9Y4X1 527 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 A0A1B0GTH9 108 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 A0A1W2PPL8 197 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 OR14I1A6ND48 311 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 SLC22A20A6NK97 555 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 E9PI62 339 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 ATE1O95260 518 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 SPARCP09486 303 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 TAS2R43P59537 309 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 EGR3Q06889 387 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 GPR50Q13585 617 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 PLEKHG7Q6ZR37 379 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 FOXL2NBQ6ZUU3 175 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.3■□□□□ 0.2
CLN3-254ENST00000637050 TUSC5Q8IXB3 177 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 ZFP41Q8N8Y5 198 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 THEM6Q8WUY1 208 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 ASB17Q8WXJ9 295 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 RPL3LQ92901 407 aaKnown RBP16.3■□□□□ 0.2
CLN3-254ENST00000637050 PELI1Q96FA3 418 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 ULBP2Q9BZM5 246 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 LUZP4Q9P127 313 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 SF3B6Q9Y3B4 125 aaKnown RBP16.3■□□□□ 0.2
CLN3-254ENST00000637050 MGAQ8IWI9 3026 aa16.3■□□□□ 0.2
CLN3-254ENST00000637050 DHHO43323 396 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 AIREO43918 545 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 TGM6O95932 706 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 YES1P07947 543 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 FAM87AP0C7U9 286 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms