RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 MAD2L1BPQ15013 274 aaPredicted RBP15.77■□□□□ 0.11
CLN3-241ENST00000635861 ERICH5Q6P6B1 374 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 TMEM154Q6P9G4 183 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 UNQ6126/PRO20091Q6UXV3 157 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 TSPYL5Q86VY4 417 aaPredicted RBP15.77■□□□□ 0.11
CLN3-241ENST00000635861 C1orf174Q8IYL3 243 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 RBM15BQ8NDT2 890 aaKnown RBP15.77■□□□□ 0.11
CLN3-241ENST00000635861 OR8J3Q8NGG0 315 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 OR51F2Q8NH61 342 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 ZFAND2BQ8WV99 257 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 ASB10Q8WXI3 467 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 KCNN2Q9H2S1 579 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 HINT3Q9NQE9 182 aaKnown RBP15.77■□□□□ 0.11
CLN3-241ENST00000635861 TAAR3PQ9P1P4 343 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 FZR1Q9UM11 496 aa15.77■□□□□ 0.11
CLN3-241ENST00000635861 HAX1O00165 279 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 OR7A10O76100 309 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 NAT2P11245 290 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 ANPEPP15144 967 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 ACADSP16219 412 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 FUT1P19526 365 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 CRYBA2P53672 197 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 UGT2B15P54855 530 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 UCP2P55851 309 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 TAS2R41P59536 307 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 TAF11Q15544 211 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 FAM209AQ5JX71 171 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 NANOGP8Q6NSW7 305 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 FNDC8Q8TC99 324 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 YIPF5Q969M3 257 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 NANOGQ9H9S0 305 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 SIAEQ9HAT2 523 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 INIPQ9NRY2 104 aa15.76■□□□□ 0.11
CLN3-241ENST00000635861 PPIHO43447 177 aaKnown RBP15.75■□□□□ 0.11
CLN3-241ENST00000635861 NCR1O76036 304 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 LCKP06239 509 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 MMP7P09237 267 aaPredicted RBP15.75■□□□□ 0.11
CLN3-241ENST00000635861 FAM157BP0CG42 384 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 GAAP10253 952 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 APLNRP35414 380 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 MRPS34P82930 218 aaKnown RBP15.75■□□□□ 0.11
CLN3-241ENST00000635861 RINLQ6ZS11 566 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 CARM1Q86X55 608 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 CALHM3Q86XJ0 350 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 MEX3DQ86XN8 651 aaKnown RBP15.75■□□□□ 0.11
CLN3-241ENST00000635861 TMEM239Q8WW34 195 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 SGTBQ96EQ0 304 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 ZNF347Q96SE7 839 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 ECSITQ9BQ95 431 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 HIF1ANQ9NWT6 349 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 SH3GLB1Q9Y371 365 aa15.75■□□□□ 0.11
CLN3-241ENST00000635861 TENM1Q9UKZ4 2725 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 TRAV20A0A0B4J274 112 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 BBIP1A8MTZ0 92 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 FAM157AC9JC47 383 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 TRMUO75648 421 aaKnown RBP15.74■□□□□ 0.11
CLN3-241ENST00000635861 DCTN3O75935 186 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 IGHV3-13P01766 116 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 F13BP05160 661 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 ITGA2P17301 1181 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 CRYBB2P43320 205 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 MYBPC1Q00872 1141 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 SRSF2Q01130 221 aaKnown RBP15.74■□□□□ 0.11
CLN3-241ENST00000635861 PAQR4Q8N4S7 273 aaPredicted RBP15.74■□□□□ 0.11
CLN3-241ENST00000635861 LRRC58Q96CX6 371 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 RSRC1Q96IZ7 334 aaKnown RBP15.74■□□□□ 0.11
CLN3-241ENST00000635861 BATF3Q9NR55 127 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 RIMS3Q9UJD0 308 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 MED31Q9Y3C7 131 aa15.74■□□□□ 0.11
CLN3-241ENST00000635861 FBP2O00757 339 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 CLPTM1O96005 669 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 MAGEB1P43366 347 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 LMO4P61968 165 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 HSF2Q03933 536 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 RUNX1T1Q06455 604 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 ARMC4Q5T2S8 1044 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 NKAIN4Q8IVV8 208 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 TMEM255BQ8WV15 326 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 RAB39BQ96DA2 213 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 LRRC37BQ96QE4 947 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 TXNIPQ9H3M7 391 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 CCNB1IP1Q9NPC3 277 aa15.73■□□□□ 0.11
CLN3-241ENST00000635861 DYSFO75923 2080 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 H3BSA7 217 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 CCL2P13500 99 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 IFNA8P32881 189 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 MAPRE2Q15555 327 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 SHQ1Q6PI26 577 aaKnown RBP15.72■□□□□ 0.11
CLN3-241ENST00000635861 LRRC18Q8N456 261 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 SYT14Q8NB59 555 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 PFN4Q8NHR9 129 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 ALG12Q9BV10 488 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 NARFLQ9H6Q4 476 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 C20orf141Q9NUB4 165 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 DECR2Q9NUI1 292 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 TREM2Q9NZC2 230 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 CGGBP1Q9UFW8 167 aaPredicted RBP15.72■□□□□ 0.11
CLN3-241ENST00000635861 HIF3AQ9Y2N7 669 aa15.72■□□□□ 0.11
CLN3-241ENST00000635861 IGHV1-69-2A0A0G2JMI3 117 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 FXYD1O00168 92 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms