RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OR4F15Q8NGB8 312 aa18■□□□□ 0.47
CLN3-240ENST00000631023 OR52L1Q8NGH7 329 aa18■□□□□ 0.47
CLN3-240ENST00000631023 RASD2Q96D21 266 aa18■□□□□ 0.47
CLN3-240ENST00000631023 SAMD8Q96LT4 415 aa18■□□□□ 0.47
CLN3-240ENST00000631023 ERMAPQ96PL5 475 aaPredicted RBP18■□□□□ 0.47
CLN3-240ENST00000631023 SEC61A2Q9H9S3 476 aa18■□□□□ 0.47
CLN3-240ENST00000631023 VNN3Q9NY84 501 aa18■□□□□ 0.47
CLN3-240ENST00000631023 UGT2A1Q9Y4X1 527 aa18■□□□□ 0.47
CLN3-240ENST00000631023 ARFGEF3Q5TH69 2177 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 IGKV1D-43A0A0B4J1Z2 117 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 H7C1C5 153 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 ARPC3O15145 178 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 IDH3BO43837 385 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 PPP1R3DO95685 299 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 NOS3P29474 1203 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 CDAP32320 146 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 ERFP50548 548 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 FABP6P51161 128 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 LCN6P62502 163 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 CBX1P83916 185 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 ZNF544Q6NX49 715 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 FBXL14Q8N1E6 418 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 LRRC18Q8N456 261 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 GIPC3Q8TF64 312 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 IGFBPL1Q8WX77 278 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 DGCR6LQ9BY27 220 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 CDH10Q9Y6N8 788 aa17.99■□□□□ 0.47
CLN3-240ENST00000631023 MED13LQ71F56 2210 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 E2F6O75461 281 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 CIB2O75838 187 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 SOD3P08294 240 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 PATE4P0C8F1 98 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 ZNF14P17017 642 aaPredicted RBP17.98■□□□□ 0.47
CLN3-240ENST00000631023 APOBEC3AP31941 199 aaPredicted RBP17.98■□□□□ 0.47
CLN3-240ENST00000631023 TTKP33981 857 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 FAM27BQ5VT28 67 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 SPNS3Q6ZMD2 512 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 RASSF6Q6ZTQ3 369 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 LRRC75A-AS1Q8N1F1 130 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 OR10G2Q8NGC3 310 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 HTRA1Q92743 480 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 GRIP2Q9C0E4 1043 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 NOX3Q9HBY0 568 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 CCNB1IP1Q9NPC3 277 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 IL20Q9NYY1 176 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 DNAJB9Q9UBS3 223 aa17.98■□□□□ 0.47
CLN3-240ENST00000631023 A0A1W2PPL8 197 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 ARRDC5A6NEK1 342 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 VSTM5A8MXK1 200 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 PTHP01270 115 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 SERPINA5P05154 406 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 PLP2Q04941 152 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 B3GLCTQ6Y288 498 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 ASRGL1Q7L266 308 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 MYPOPQ86VE0 399 aaPredicted RBP17.97■□□□□ 0.47
CLN3-240ENST00000631023 JAZF1Q86VZ6 243 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 MUC15Q8N387 334 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 FGFBP3Q8TAT2 258 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 GTPBP3Q969Y2 492 aaKnown RBP17.97■□□□□ 0.47
CLN3-240ENST00000631023 ZNF75AQ96N20 296 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 SYT4Q9H2B2 425 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 VSX1Q9NZR4 365 aaPredicted RBP17.97■□□□□ 0.47
CLN3-240ENST00000631023 SPEF1Q9Y4P9 236 aa17.97■□□□□ 0.47
CLN3-240ENST00000631023 IGHV2OR16-5A0A0B4J2B6 119 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 ARHGDIAP52565 204 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 COX10Q12887 443 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 RAB39AQ14964 217 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 DTX2Q86UW9 622 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 NABP1Q96AH0 204 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 SLCO4A1Q96BD0 722 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 MS4A3Q96HJ5 214 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 C1orf198Q9H425 327 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 EGLN3Q9H6Z9 239 aa17.96■□□□□ 0.47
CLN3-240ENST00000631023 SLC16A7O60669 478 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 DEAF1O75398 565 aaPredicted RBP17.96■□□□□ 0.46
CLN3-240ENST00000631023 KHDRBS3O75525 346 aaKnown RBP17.96■□□□□ 0.46
CLN3-240ENST00000631023 RENP00797 406 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 BMP4P12644 408 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 MSR1P21757 451 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 CRABP1P29762 137 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 CALCRP30988 508 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 CDKN2AP42771 156 aaKnown RBP17.96■□□□□ 0.46
CLN3-240ENST00000631023 NKX6-1P78426 367 aaPredicted RBP17.96■□□□□ 0.46
CLN3-240ENST00000631023 CLEC12AQ5QGZ9 265 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 DNM1P34Q6PK57 102 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 FOXL2NBQ6ZUU3 175 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 PTCHD4Q6ZW05 846 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 NUP37Q8NFH4 326 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 TRMT61AQ96FX7 289 aaKnown RBP17.96■□□□□ 0.46
CLN3-240ENST00000631023 FEVQ99581 238 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 TRAF4Q9BUZ4 470 aaPredicted RBP17.96■□□□□ 0.46
CLN3-240ENST00000631023 GSX2Q9BZM3 304 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 RERGLQ9H628 205 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 CA10Q9NS85 328 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 CBLN4Q9NTU7 201 aa17.96■□□□□ 0.46
CLN3-240ENST00000631023 ZNF701Q9NV72 531 aaPredicted RBP17.96■□□□□ 0.46
CLN3-240ENST00000631023 PDP1Q9P0J1 537 aaPredicted RBP17.96■□□□□ 0.46
CLN3-240ENST00000631023 F8P00451 2351 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 CELSR1Q9NYQ6 3014 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 IQCMA0A1B0GVH7 501 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms