RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 SLC16A7O60669 478 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 FARS2O95363 451 aaKnown RBP12.88□□□□□ -0.35
PNKP-221ENST00000627317 HMGN1P05114 100 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 CRABP1P29762 137 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 GUCA1AP43080 201 aaPredicted RBP12.88□□□□□ -0.35
PNKP-221ENST00000627317 GIPRP48546 466 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 PPA1Q15181 289 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 TBRG1Q3YBR2 411 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 TMEM236Q5W0B7 351 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 SLC25A47Q6Q0C1 308 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 WFDC8Q8IUA0 241 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 CYB561A3Q8NBI2 242 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 OR52N5Q8NH56 324 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 HSD17B8Q92506 261 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 BCL2L2Q92843 193 aaPredicted RBP12.88□□□□□ -0.35
PNKP-221ENST00000627317 PLEKHA8Q96JA3 519 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 SLC38A2Q96QD8 506 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 GABARAPL3Q9BY60 117 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 PLEKHF2Q9H8W4 249 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 RNPEPL1Q9HAU8 725 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 RPRD1BQ9NQG5 326 aaKnown RBP12.88□□□□□ -0.35
PNKP-221ENST00000627317 SLC17A5Q9NRA2 495 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 CMC2Q9NRP2 79 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 TMEM38BQ9NVV0 291 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 ZNF226Q9NYT6 803 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 AMDHD2Q9Y303 409 aa12.88□□□□□ -0.35
PNKP-221ENST00000627317 IGKV1D-43A0A0B4J1Z2 117 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 KHDRBS3O75525 346 aaKnown RBP12.87□□□□□ -0.35
PNKP-221ENST00000627317 CTLA4P16410 223 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 PAICSP22234 425 aaKnown RBP12.87□□□□□ -0.35
PNKP-221ENST00000627317 PEX2P28328 305 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 CAPZA2P47755 286 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 CDK5Q00535 292 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 CRMP1Q14194 572 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 PTGES3Q15185 160 aaKnown RBP12.87□□□□□ -0.35
PNKP-221ENST00000627317 TAB1Q15750 504 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 LRRC36Q1X8D7 754 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 ACSM5Q6NUN0 579 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 SPNS3Q6ZMD2 512 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 ZNF627Q7L945 461 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 SSX8Q7RTT4 187 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 SLC37A3Q8NCC5 494 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 NPEPL1Q8NDH3 523 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 NANOS1Q8WY41 292 aaKnown RBP12.87□□□□□ -0.35
PNKP-221ENST00000627317 NINJ1Q92982 152 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 NUAK2Q9H093 628 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 NELFAQ9H3P2 528 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 FN3KQ9H479 309 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 SEC61A2Q9H9S3 476 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 NGBQ9NPG2 151 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 OBP2BQ9NPH6 170 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 RRP15Q9Y3B9 282 aaKnown RBP12.87□□□□□ -0.35
PNKP-221ENST00000627317 UGT2A1Q9Y4X1 527 aa12.87□□□□□ -0.35
PNKP-221ENST00000627317 A0A1W2PR80 420 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 OR6C68A6NDL8 312 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 ZAR1LA6NP61 321 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 WNT11O96014 354 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 THBDP07204 575 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 OR8G3PP0DMU2 310 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 HOXB1P14653 301 aaPredicted RBP12.86□□□□□ -0.35
PNKP-221ENST00000627317 LOXP28300 417 aaPredicted RBP12.86□□□□□ -0.35
PNKP-221ENST00000627317 CDAP32320 146 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 CENPAP49450 140 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 MRPS34P82930 218 aaKnown RBP12.86□□□□□ -0.35
PNKP-221ENST00000627317 SLC34A1Q06495 639 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 NPRL3Q12980 569 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 SNAPC1Q16533 368 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 SGCAQ16586 387 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 LPCAT4Q643R3 524 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 PAMR1Q6UXH9 720 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 CCDC36Q8IYA8 594 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 SLC22A24Q8N4F4 322 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 HTRA1Q92743 480 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 OTULINQ96BN8 352 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 BOD1Q96IK1 185 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 TSSK2Q96PF2 358 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 SLC29A1Q99808 456 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 RACGAP1Q9H0H5 632 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 CXXC4Q9H2H0 198 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 C8orf4Q9NR00 106 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 NKX1-2Q9UD57 310 aaPredicted RBP12.86□□□□□ -0.35
PNKP-221ENST00000627317 ST6GALNAC2Q9UJ37 374 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 SLC25A15Q9Y619 301 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 AKAP6Q13023 2319 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 ITPR3Q14573 2671 aa12.86□□□□□ -0.35
PNKP-221ENST00000627317 ABCA4P78363 2273 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 ARPC4-TTLL3A0A0A6YYG9 625 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 CASQ2O14958 399 aaPredicted RBP12.85□□□□□ -0.35
PNKP-221ENST00000627317 SURF4O15260 269 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 CD79AP11912 226 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 NPR2P20594 1047 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 CRYGSP22914 178 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 EPHA2P29317 976 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 TUBA1BP68363 451 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 TUBA4AP68366 448 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 ETFDHQ16134 617 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 ZIK1Q3SY52 487 aaPredicted RBP12.85□□□□□ -0.35
PNKP-221ENST00000627317 NRN1LQ496H8 165 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 C1QTNF12Q5T7M4 302 aa12.85□□□□□ -0.35
PNKP-221ENST00000627317 SLX4IPQ5VYV7 408 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms