RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 SLC25A40Q8TBP6 338 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.39□□□□□ -0.43
PNKP-218ENST00000625299 ZNF347Q96SE7 839 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 DIRC2Q96SL1 478 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 PKP2Q99959 881 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 WFDC6Q9BQY6 131 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 OR2J1Q9GZK6 312 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 PAIP1Q9H074 479 aaKnown RBP12.39□□□□□ -0.43
PNKP-218ENST00000625299 MSL2Q9HCI7 577 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 CCNB1IP1Q9NPC3 277 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 TNFRSF19Q9NS68 423 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 EIF3KQ9UBQ5 218 aaKnown RBP12.39□□□□□ -0.43
PNKP-218ENST00000625299 OR5V1Q9UGF6 321 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 TRIM33Q9UPN9 1127 aa12.39□□□□□ -0.43
PNKP-218ENST00000625299 C5orf49A4QMS7 147 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 HDAC3O15379 428 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 TPST2O60704 377 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 IGHG1P01857 330 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 UMPSP11172 480 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 BMP2P12643 396 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 WNT5AP41221 380 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 TNFAIP6P98066 277 aaPredicted RBP12.38□□□□□ -0.43
PNKP-218ENST00000625299 CDK6Q00534 326 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 KRT71Q3SY84 523 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 REEP3Q6NUK4 255 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 C16orf87Q6PH81 154 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 KIR3DL3Q8N743 410 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 OR52E2Q8NGJ4 325 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 ABHD4Q8TB40 342 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 KLF14Q8TD94 323 aaPredicted RBP12.38□□□□□ -0.43
PNKP-218ENST00000625299 GTF2H4Q92759 462 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 MCHR2Q969V1 340 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 MARS2Q96GW9 593 aaKnown RBP12.38□□□□□ -0.43
PNKP-218ENST00000625299 KCNN2Q9H2S1 579 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 PATZ1Q9HBE1 687 aaKnown RBP12.38□□□□□ -0.43
PNKP-218ENST00000625299 KCNK9Q9NPC2 374 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 CYSLTR2Q9NS75 346 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 TAS2R5Q9NYW4 299 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 ZIM2Q9NZV7 527 aa12.38□□□□□ -0.43
PNKP-218ENST00000625299 PDP1Q9P0J1 537 aaPredicted RBP12.38□□□□□ -0.43
PNKP-218ENST00000625299 PRORSD1PA6NEY8 169 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 MCIDASD6RGH6 385 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 M0R3H8 397 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 RGS16O15492 202 aaPredicted RBP12.37□□□□□ -0.43
PNKP-218ENST00000625299 MMP7P09237 267 aaPredicted RBP12.37□□□□□ -0.43
PNKP-218ENST00000625299 ZNF74Q16587 644 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 SWT1Q5T5J6 900 aaKnown RBP12.37□□□□□ -0.43
PNKP-218ENST00000625299 HHATQ5VTY9 493 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 BRICD5Q6PL45 260 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 RFPL4BQ6ZWI9 263 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 C10orf111Q8N326 155 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 GOLGA6L1Q8N7Z2 621 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 NOXO1Q8NFA2 376 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 AKR7LQ8NHP1 331 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 WFDC12Q8WWY7 111 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 ZBTB9Q96C00 473 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 MCHR1Q99705 422 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 NANSQ9NR45 359 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 TMEM106BQ9NUM4 274 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 ARMCX1Q9P291 453 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 ZDHHC8Q9ULC8 765 aa12.37□□□□□ -0.43
PNKP-218ENST00000625299 TRAV40A0A0B4J280 105 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 CPSF4LA6NMK7 179 aaKnown RBP12.36□□□□□ -0.43
PNKP-218ENST00000625299 HOXA3O43365 443 aaPredicted RBP12.36□□□□□ -0.43
PNKP-218ENST00000625299 TIMM8AO60220 97 aaPredicted RBP12.36□□□□□ -0.43
PNKP-218ENST00000625299 TGDSO95455 350 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 HIST1H2ABP04908 130 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 ZNF32P17041 273 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 CDAP32320 146 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 SLC6A9P48067 706 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 GDI2P50395 445 aaKnown RBP12.36□□□□□ -0.43
PNKP-218ENST00000625299 BTG1P62324 171 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 SCARB2Q14108 478 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 ESCO2Q56NI9 601 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 ZMAT1Q5H9K5 638 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 MBNL2Q5VZF2 373 aaKnown RBP12.36□□□□□ -0.43
PNKP-218ENST00000625299 UNQ6126/PRO20091Q6UXV3 157 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 HIST3H2AQ7L7L0 130 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 NANOGNBQ7Z5D8 188 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 ARMC8Q8IUR7 673 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 SMYD1Q8NB12 490 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 HIST1H2ACQ93077 130 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 POM121L2Q96KW2 1035 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 ZNF607Q96SK3 696 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 ARHGDIGQ99819 225 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 CENPHQ9H3R5 247 aa12.36□□□□□ -0.43
PNKP-218ENST00000625299 SDR39U1Q9NRG7 319 aaPredicted RBP12.36□□□□□ -0.43
PNKP-218ENST00000625299 POLR3KQ9Y2Y1 108 aaPredicted RBP12.36□□□□□ -0.43
PNKP-218ENST00000625299 LOC100509620A0A075B734 347 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 FAM181BA6NEQ2 426 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 M0QZ24 198 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 CHP2O43745 196 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 SLC2A10O95528 541 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 CRYBA1P05813 215 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 CD55P08174 381 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 SLC6A2P23975 617 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 CD80P33681 288 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 LIPAP38571 399 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 RAG2P55895 527 aa12.35□□□□□ -0.43
PNKP-218ENST00000625299 PPP1CBP62140 327 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms