RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CSNK1A1P48729 337 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 BIDP55957 195 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 ST3GAL3Q11203 375 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 CAMK2DQ13557 499 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 MSMPQ1L6U9 139 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 ZNF813Q6ZN06 617 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 NANOGNBQ7Z5D8 188 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 VTCN1Q7Z7D3 282 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 PAPD5Q8NDF8 572 aaKnown RBP16.31■□□□□ 0.2
CDX1-202ENST00000616154 PFN4Q8NHR9 129 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 GEMIN6Q8WXD5 167 aaKnown RBP16.31■□□□□ 0.2
CDX1-202ENST00000616154 SLC25A44Q96H78 314 aaPredicted RBP16.31■□□□□ 0.2
CDX1-202ENST00000616154 MS4A3Q96HJ5 214 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 HSH2DQ96JZ2 352 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 C7orf34Q96L11 122 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 SNX18Q96RF0 628 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 ULBP2Q9BZM5 246 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 MAN2C1Q9NTJ4 1040 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 C20orf141Q9NUB4 165 aa16.31■□□□□ 0.2
CDX1-202ENST00000616154 DHRS12A0PJE2 317 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 C11orf98E9PRG8 122 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 SYNGR3O43761 229 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 PRSS23O95084 383 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 ZNF682O95780 498 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 HIST1H2ABP04908 130 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 PGA4P0DJD7 388 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 PGA3P0DJD8 388 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 GLRXP35754 106 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 MAGEA2P43356 314 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 CDH15P55291 814 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 RPL18Q07020 188 aaKnown RBP16.3■□□□□ 0.2
CDX1-202ENST00000616154 TRIP10Q15642 601 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 HIST3H3Q16695 136 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 LIPNQ5VXI9 398 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 UGT2A3Q6UWM9 527 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 HIST3H2AQ7L7L0 130 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 SPATA24Q86W54 205 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 OR6N1Q8NGY5 312 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 CANT1Q8WVQ1 401 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 HIST1H2ACQ93077 130 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 SLCO4A1Q96BD0 722 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 SGTBQ96EQ0 304 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 TPD52L3Q96J77 140 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 FOXB1Q99853 325 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 MRPL13Q9BYD1 178 aaKnown RBP16.3■□□□□ 0.2
CDX1-202ENST00000616154 MRPL37Q9BZE1 423 aaKnown RBP16.3■□□□□ 0.2
CDX1-202ENST00000616154 TPK1Q9H3S4 243 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 GLTPQ9NZD2 209 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 ZNF224Q9NZL3 707 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 TMEFF2Q9UIK5 374 aaPredicted RBP16.3■□□□□ 0.2
CDX1-202ENST00000616154 POFUT2Q9Y2G5 429 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 MED31Q9Y3C7 131 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 SPEF1Q9Y4P9 236 aa16.3■□□□□ 0.2
CDX1-202ENST00000616154 M0R233 179 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 FFAR1O14842 300 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 RNF13O43567 381 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 IFNW1P05000 195 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 B4GALT1P15291 398 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 FUT1P19526 365 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 ZNF133P52736 654 aaPredicted RBP16.29■□□□□ 0.2
CDX1-202ENST00000616154 ELF3P78545 371 aaPredicted RBP16.29■□□□□ 0.2
CDX1-202ENST00000616154 PIGFQ07326 219 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 NRN1LQ496H8 165 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 IFI44LQ53G44 452 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 PIWIL3Q7Z3Z3 882 aaKnown RBP16.29■□□□□ 0.2
CDX1-202ENST00000616154 TSEN54Q7Z6J9 526 aaKnown RBP16.29■□□□□ 0.2
CDX1-202ENST00000616154 RFLNBQ8N5W9 214 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 ZNF566Q969W8 418 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 REV1Q9UBZ9 1251 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 HIF3AQ9Y2N7 669 aa16.29■□□□□ 0.2
CDX1-202ENST00000616154 LYNX1G3V0Z9 82 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 ENTPD5O75356 428 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 SERPINI2O75830 405 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 LYNX1P0DP58 116 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 IFNA8P32881 189 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 LRFN4Q6PJG9 635 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 C10orf67Q8IYJ2 551 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 MS4A5Q9H3V2 200 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 IL1RAPQ9NPH3 570 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 ARMC1Q9NVT9 282 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 FBXL3Q9UKT7 428 aa16.28■□□□□ 0.2
CDX1-202ENST00000616154 TCF21O43680 179 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 UBL3O95164 117 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 RAB36O95755 333 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 BCL10O95999 233 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 IGHG1P01857 330 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 RAP2AP10114 183 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 FUT4P22083 530 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 GIPRP48546 466 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 PTDSS1P48651 473 aaKnown RBP16.27■□□□□ 0.2
CDX1-202ENST00000616154 DVL1P1P54792 670 aaPredicted RBP16.27■□□□□ 0.2
CDX1-202ENST00000616154 RPS23P62266 143 aaKnown RBP16.27■□□□□ 0.2
CDX1-202ENST00000616154 RAB1AP62820 205 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 FAM98BQ52LJ0 330 aaKnown RBP16.27■□□□□ 0.2
CDX1-202ENST00000616154 ELFN2Q5R3F8 820 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 ARMC4Q5T2S8 1044 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 HDDC2Q7Z4H3 204 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 ASB10Q8WXI3 467 aa16.27■□□□□ 0.2
CDX1-202ENST00000616154 NMD3Q96D46 503 aaKnown RBP16.27■□□□□ 0.2
CDX1-202ENST00000616154 ANKRD19PQ9H560 264 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms