RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 DEFA5Q01523 94 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 PRSS42Q7Z5A4 293 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 ATG4DQ86TL0 474 aaPredicted RBP12.7□□□□□ -0.38
COL6A1-207ENST00000612273 GALNT16Q8N428 558 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 CYYR1Q96J86 154 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 MTIF3Q9H2K0 278 aaKnown RBP12.7□□□□□ -0.38
COL6A1-207ENST00000612273 SEMA6CQ9H3T2 930 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 TMEM185BQ9H7F4 350 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 PTTG3PQ9NZH4 202 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 IGHV5-51A0A0C4DH38 117 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 FAUP35544 74 aaKnown RBP12.7□□□□□ -0.38
COL6A1-207ENST00000612273 SHHQ15465 462 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 ACKR1Q16570 336 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 SLC22A6Q4U2R8 563 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 NHLRC3Q5JS37 347 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 SLC35D3Q5M8T2 416 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 TSSK4Q6SA08 328 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 POLE3Q9NRF9 147 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 KCNMB2Q9Y691 235 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 TMEM272A0A1B0GTI8 110 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 NAP1L6A6NFF2 107 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 H7C417 338 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 HLA-DOBP13765 273 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 CD1CP29017 333 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 UBE2IP63279 158 aaKnown RBP12.7□□□□□ -0.38
COL6A1-207ENST00000612273 FMODQ06828 376 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 MOGAT2Q3SYC2 334 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 ZNF684Q5T5D7 378 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 SLC6A19Q695T7 634 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 STEAP1BQ6NZ63 245 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 GSG1LQ6UXU4 331 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 ZNF454Q8N9F8 522 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 FAM71CQ8NEG0 241 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 ST8SIA4Q92187 359 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 MTFP1Q9UDX5 166 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 PFDN2Q9UHV9 154 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 GPR160Q9UJ42 338 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 HIF3AQ9Y2N7 669 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 EMC9Q9Y3B6 208 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 CLDN16Q9Y5I7 305 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 NPTNQ9Y639 398 aa12.7□□□□□ -0.38
COL6A1-207ENST00000612273 TICRRQ7Z2Z1 1910 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 XRCC3O43542 346 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 RAB3DO95716 219 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 ABHD16AO95870 558 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 CTLA4P16410 223 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 ARRB1P49407 418 aaPredicted RBP12.69□□□□□ -0.38
COL6A1-207ENST00000612273 RPS4XP62701 263 aaKnown RBP12.69□□□□□ -0.38
COL6A1-207ENST00000612273 ZNF117Q03924 483 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 RAB11BQ15907 218 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 DEFB133Q30KQ1 61 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 KLHL26Q53HC5 615 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 RHOUQ7L0Q8 258 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 SDR16C5Q8N3Y7 309 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 PHOSPHO2Q8TCD6 241 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 LMX1AQ8TE12 382 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 SLC25A44Q96H78 314 aaPredicted RBP12.69□□□□□ -0.38
COL6A1-207ENST00000612273 NOP16Q9Y3C1 178 aaKnown RBP12.69□□□□□ -0.38
COL6A1-207ENST00000612273 TSPAN9O75954 239 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 CALCBP10092 127 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 IL11P20809 199 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 IL12BP29460 328 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 GNALP38405 381 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 SKP1P63208 163 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 RTN4RL2Q86UN3 420 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 CDC20BQ86Y33 519 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 OR1J4Q8NGS1 313 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 ZNF417Q8TAU3 575 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 C4orf45Q96LM5 186 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 TBL1XR1Q9BZK7 514 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 DHDHQ9UQ10 334 aa12.69□□□□□ -0.38
COL6A1-207ENST00000612273 LOC101059948A0A1B0GTJ6 334 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 ATP6V1G2-DDX39BF2Z307 99 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 PPP3CBP16298 524 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 VAMP1P23763 118 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 CAPZA2P47755 286 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 SKP2Q13309 424 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 FZD2Q14332 565 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 OR52W1Q6IF63 320 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 ATRAIDQ6UW56 229 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 KCTD9Q7L273 389 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 ZNF615Q8N8J6 731 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 NPAS1Q99742 590 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 NUDT22Q9BRQ3 303 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 MED11Q9P086 117 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 COA3Q9Y2R0 106 aaPredicted RBP12.68□□□□□ -0.38
COL6A1-207ENST00000612273 FAM186AA6NE01 2351 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 FREM2Q5SZK8 3169 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 SHISA8B8ZZ34 492 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 HYAL1Q12794 435 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 EIF2B1Q14232 305 aaKnown RBP12.68□□□□□ -0.38
COL6A1-207ENST00000612273 GFOD2Q3B7J2 385 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 HLA-DQA1Q5Y7H0 255 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 GVQW1Q8N7I0 195 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 OR1J2Q8NGS2 313 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 PLEKHA1Q9HB21 404 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 SESN1Q9Y6P5 492 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 OR2M5A3KFT3 312 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 AKAIN1P0CW23 69 aa12.68□□□□□ -0.38
COL6A1-207ENST00000612273 C4BPBP20851 252 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms