RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ABCD4O14678 606 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 IGLV1-44P01699 117 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 NPR2P20594 1047 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 DAPP51397 102 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 PIGFQ07326 219 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 GSG1Q2KHT4 349 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 LEG1Q6P5S2 330 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 ZNF704Q6ZNC4 412 aaPredicted RBP14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 FOXL2NBQ6ZUU3 175 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 ZDHHC13Q8IUH4 622 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 SVOPLQ8N434 492 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 OR2T33Q8NG76 320 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 OR4Q3Q8NH05 313 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 FGFBP3Q8TAT2 258 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 TEX47Q8TBZ9 253 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 DNAJC9Q8WXX5 260 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 NANOS1Q8WY41 292 aaKnown RBP14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 NRGNQ92686 78 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 SLC38A2Q96QD8 506 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 SNX18Q96RF0 628 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 PKP2Q99959 881 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 NUAK2Q9H093 628 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 NOX3Q9HBY0 568 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 KIF17Q9P2E2 1029 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 BAIAP2Q9UQB8 552 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 IGHV1-18A0A0C4DH31 117 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 SLC16A7O60669 478 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 PATE4P0C8F1 98 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 CD79AP11912 226 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 OSMP13725 252 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 ARR3P36575 388 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 C3orf36Q3SXR2 165 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 ZNF362Q5T0B9 420 aaPredicted RBP14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 LRRC18Q8N456 261 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 SDR9C7Q8NEX9 313 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 OR52E2Q8NGJ4 325 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 ZNF75AQ96N20 296 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 TSSK2Q96PF2 358 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 GABARAPL1Q9H0R8 117 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 LIME1Q9H400 295 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 SEC61A2Q9H9S3 476 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 OAZ3Q9UMX2 235 aa14.41□□□□□ -0.1
CCDC28A-202ENST00000611852 HEATR1Q9H583 2144 aaKnown RBP14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 A0A1W2PPL8 197 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 OR6C68A6NDL8 312 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 DCTN6O00399 190 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 UBL3O95164 117 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 RENP00797 406 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 CELA3BP08861 270 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 CECR9P0C854 216 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 POU1F1P28069 291 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 CRABP1P29762 137 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 GIPRP48546 466 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 RAB1AP62820 205 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 SPOCK1Q08629 439 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 SGCAQ16586 387 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 FAM27BQ5VT28 67 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 ADAM5Q6NVV9 412 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 SLC16A14Q7RTX9 510 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 NPEPL1Q8NDH3 523 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 KBTBD8Q8NFY9 601 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 LILRB1Q8NHL6 650 aaPredicted RBP14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 DDOQ99489 341 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 RERGLQ9H628 205 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 DCLRE1BQ9H816 532 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 S100A14Q9HCY8 104 aa14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 PAPOLBQ9NRJ5 636 aaKnown RBP14.4□□□□□ -0.1
CCDC28A-202ENST00000611852 CSMD2Q7Z408 3487 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 SHISA9B4DS77 424 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 KHDRBS3O75525 346 aaKnown RBP14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 GUCA1AP43080 201 aaPredicted RBP14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 PTDSS1P48651 473 aaKnown RBP14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 IDH3GP51553 393 aaPredicted RBP14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 DBPQ10586 325 aaPredicted RBP14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 NPRL3Q12980 569 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 PGGHGQ32M88 737 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 SLC36A2Q495M3 483 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 KDM4DQ6B0I6 523 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 DPPA2Q7Z7J5 298 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 MYPOPQ86VE0 399 aaPredicted RBP14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 OR6V1Q8N148 313 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 PARP8Q8N3A8 854 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 IQCF1Q8N6M8 205 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 RADILQ96JH8 1075 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 RNPEPL1Q9HAU8 725 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 SRA1Q9HD15 236 aaKnown RBP14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 RPRD1BQ9NQG5 326 aaKnown RBP14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 POLE4Q9NR33 117 aa14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 COA3Q9Y2R0 106 aaPredicted RBP14.39□□□□□ -0.11
CCDC28A-202ENST00000611852 LRBAP50851 2863 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 RAI1Q7Z5J4 1906 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 IGLV1-36A0A0B4J1U3 117 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 SAC3D1A6NKF1 404 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 RAB36O95755 333 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 SCG5P05408 212 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 ZNF14P17017 642 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 MSR1P21757 451 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 LAP3P28838 519 aa14.38□□□□□ -0.11
CCDC28A-202ENST00000611852 SLC27A4Q6P1M0 643 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms