RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	NANS	Q9NR45	359 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	ING3	Q9NXR8	418 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	MOK	Q9UQ07	419 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	RASD1	Q9Y272	281 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	KLF13	Q9Y2Y9	288 aa	Predicted RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	CNTRL	Q7Z7A1	2325 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SMIM30	A4D0T7	59 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	LRRC3C	A6NJW4	275 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	HSPB2	A8KAH6	182 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	ZNF879	B4DU55	563 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	LRRN3	E7EW58	273 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341		E9PI62	339 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	KLRC4-KLRK1	H3BQV0	150 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	NME2P1	O60361	137 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	AHSA1	O95433	338 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	MT-ATP6	P00846	226 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	C1QB	P02746	253 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	HIST1H2AB	P04908	130 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	NME2	P22392	152 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SRD5A2	P31213	254 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	NKX2-5	P52952	324 aa	Predicted RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SLC3A1	Q07837	685 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	FOXO1	Q12778	655 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	HSPB2	Q16082	182 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SLC6A19	Q695T7	634 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	C3orf33	Q6P1S2	294 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	IGFL2	Q6UWQ7	119 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	B3GLCT	Q6Y288	498 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	HIST3H2A	Q7L7L0	130 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	LSR	Q86X29	649 aa	Predicted RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SULF2	Q8IWU5	870 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SLC35F2	Q8IXU6	374 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	LRRC17	Q8N6Y2	441 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	FAM98A	Q8NCA5	519 aa	Known RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	OR6S1	Q8NH40	331 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SLC25A43	Q8WUT9	341 aa	Predicted RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	HIST1H2AC	Q93077	130 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	PELI1	Q96FA3	418 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	TBX5	Q99593	518 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	NPAS1	Q99742	590 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	THAP7	Q9BT49	309 aa	Predicted RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	PPIL3	Q9H2H8	161 aa	Known RBP	10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	FKRP	Q9H9S5	495 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	KLHL1	Q9NR64	748 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	SPATA2	Q9UM82	520 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	HIF3A	Q9Y2N7	669 aa		10.49	□□□□□ -0.73
VRK3-223	ENST00000601341	APC2	O95996	2303 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341		A0A0G2JMP0	313 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341		A0A0X1KG70	313 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	LINC00854	A0A1B0GVQ3	168 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	SHISA8	B8ZZ34	492 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	GSTZ1	O43708	216 aa	Predicted RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	ZIC3	O60481	467 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	GLCE	O94923	617 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	TXNDC12	O95881	172 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	ZNF17	P17021	662 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	TCEA1	P23193	301 aa	Known RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	AHCY	P23526	432 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	GDI2	P50395	445 aa	Known RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	RRAS2	P62070	204 aa	Predicted RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	TNK1	Q13470	666 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	MFSD13A	Q14CX5	517 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	TOMM20	Q15388	145 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	PLA1A	Q53H76	456 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	C1QL3	Q5VWW1	255 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	MAMDC2	Q7Z304	686 aa	Predicted RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	SAMD12	Q8N8I0	201 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	CYB561A3	Q8NBI2	242 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	TMEM178A	Q8NBL3	297 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	OR4M2	Q8NGB6	313 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	OR4M1	Q8NGD0	313 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	TRMT10A	Q8TBZ6	339 aa	Known RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	UPRT	Q96BW1	309 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	MOGAT1	Q96PD6	335 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	PIGQ	Q9BRB3	760 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	HES7	Q9BYE0	225 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	POTEKP	Q9BYX7	375 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	OR11A1	Q9GZK7	315 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	RANGRF	Q9HD47	186 aa	Predicted RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	B4GALT7	Q9UBV7	327 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	NUFIP1	Q9UHK0	495 aa	Known RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	RPH3A	Q9Y2J0	694 aa	Predicted RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	MRPS18C	Q9Y3D5	142 aa	Known RBP	10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	IER3IP1	Q9Y5U9	82 aa		10.48	□□□□□ -0.73
VRK3-223	ENST00000601341	PINLYP	A6NC86	204 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	MCIDAS	D6RGH6	385 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	INMT-MINDY4	F8WBC2	141 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	PDCD5	O14737	125 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	EFNA2	O43921	213 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	FZD7	O75084	574 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	TF	P02787	698 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	BGLAP	P02818	100 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	EIF4E	P06730	217 aa	Known RBP	10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	MRPL3	P09001	348 aa	Known RBP	10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	ASAH2B	P0C7U1	165 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	TFPI	P10646	304 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	CLU	P10909	449 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	EPX	P11678	715 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	ARSB	P15848	533 aa		10.47	□□□□□ -0.73
VRK3-223	ENST00000601341	GDF1	P27539	372 aa		10.47	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms