RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 EGFL7Q9UHF1 273 aa11.2□□□□□ -0.62
LIG1-212ENST00000596549 IGLV3-9A0A075B6K5 115 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 EFCAB9A8MZ26 197 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 H7C1C5 153 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 ENTPD5O75356 428 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 CLPTM1O96005 669 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 TACSTD2P09758 323 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 APEHP13798 732 aaKnown RBP11.19□□□□□ -0.62
LIG1-212ENST00000596549 ZNF23P17027 643 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 ZNF32P17041 273 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 APEX1P27695 318 aaKnown RBP11.19□□□□□ -0.62
LIG1-212ENST00000596549 PRDX6P30041 224 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 IFNA8P32881 189 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 LSP1P33241 339 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 LIMS1P48059 325 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 CTXN1P60606 82 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 LCN6P62502 163 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 RIN1Q13671 783 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 TAF11Q15544 211 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 TBC1D28Q2M2D7 210 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 MESTQ5EB52 335 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 PABPC1L2AQ5JQF8 200 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 CYB5R2Q6BCY4 276 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 MBOAT2Q6ZWT7 520 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 FKBP9P1Q75LS8 142 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 FAM122BQ7Z309 247 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 DPPA2Q7Z7J5 298 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 ZNF786Q8N393 782 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 RNF148Q8N7C7 305 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 FAM156AQ8NDB6 213 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 SLC7A13Q8TCU3 470 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 ALG12Q9BV10 488 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 C1orf198Q9H425 327 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 CDH20Q9HBT6 801 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 SPAG4Q9NPE6 437 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 TMEM160Q9NX00 188 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 ADAM18Q9Y3Q7 739 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 SPEF1Q9Y4P9 236 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 ENPP4Q9Y6X5 453 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 FBN1P35555 2871 aaKnown RBP11.19□□□□□ -0.62
LIG1-212ENST00000596549 SVEP1Q4LDE5 3571 aa11.19□□□□□ -0.62
LIG1-212ENST00000596549 HTR3EA5X5Y0 456 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 VSTM5A8MXK1 200 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 LILRA1O75019 489 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 HPXP02790 462 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 SEMG1P04279 462 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 ERCC1P07992 297 aaPredicted RBP11.18□□□□□ -0.62
LIG1-212ENST00000596549 TCN1P20061 433 aaPredicted RBP11.18□□□□□ -0.62
LIG1-212ENST00000596549 WNT5AP41221 380 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 SLC9A3P48764 834 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 GZMKP49863 264 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 GYS2P54840 703 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 ERVK-25P63136 954 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 ALKBH6Q3KRA9 238 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 CHRFAM7AQ494W8 412 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 IQCCQ4KMZ1 466 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 RGS7BPQ6MZT1 257 aaPredicted RBP11.18□□□□□ -0.62
LIG1-212ENST00000596549 ZNF730Q6ZMV8 503 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 IL17RELQ6ZVW7 336 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 TMPRSS11FQ6ZWK6 438 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 OAFQ86UD1 273 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 ZNF101Q8IZC7 436 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 RNF113BQ8IZP6 322 aaKnown RBP11.18□□□□□ -0.62
LIG1-212ENST00000596549 UBASH3BQ8TF42 649 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 CMTM5Q96DZ9 223 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 FAM46AQ96IP4 442 aaKnown RBP11.18□□□□□ -0.62
LIG1-212ENST00000596549 C7orf34Q96L11 122 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 ANKRD19PQ9H560 264 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 CHODLQ9H9P2 273 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 NMNAT1Q9HAN9 279 aaPredicted RBP11.18□□□□□ -0.62
LIG1-212ENST00000596549 SIAEQ9HAT2 523 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 NDUFAF4Q9P032 175 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 REV1Q9UBZ9 1251 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 JMJD1CQ15652 2540 aa11.18□□□□□ -0.62
LIG1-212ENST00000596549 LOC100509620A0A075B734 347 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 TRBV4-1A0A0J9YWV2 114 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 IQCMA0A1B0GVH7 501 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 A0A1W2PPW3 197 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 NDUFAB1O14561 156 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 LMX1BO60663 402 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 DIRAS1O95057 198 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 SCG5P05408 212 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 NAT2P11245 290 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 NR2C1P13056 603 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 ZNF250P15622 560 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 LAP3P28838 519 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 MAGEB1P43366 347 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 FXYD6P3P58550 94 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 PSG4Q00888 419 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 ENDOGQ14249 297 aaKnown RBP11.17□□□□□ -0.62
LIG1-212ENST00000596549 ANKDD1AQ495B1 522 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 FAM205BPQ63HN1 556 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 GLYATQ6IB77 296 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 PODNL1Q6PEZ8 512 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 RFPL4BQ6ZWI9 263 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 CXXC5Q7LFL8 322 aaKnown RBP11.17□□□□□ -0.62
LIG1-212ENST00000596549 AKR7LQ8NHP1 331 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 GTF3AQ92664 365 aaKnown RBP11.17□□□□□ -0.62
LIG1-212ENST00000596549 YIPF5Q969M3 257 aa11.17□□□□□ -0.62
LIG1-212ENST00000596549 POM121L2Q96KW2 1035 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms