RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 ZNF229Q9UJW7 825 aa12.6□□□□□ -0.39
PNKP-202ENST00000593706 AP3M1Q9Y2T2 418 aa12.6□□□□□ -0.39
PNKP-202ENST00000593706 LOC105371242A0A075B767 164 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 A0A0G2JMP0 313 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 A0A0X1KG70 313 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 SLC22A23A1A5C7 686 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 C17orf100A8MU93 164 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 KPNA4O00629 521 aaPredicted RBP12.59□□□□□ -0.39
PNKP-202ENST00000593706 TPD52L2O43399 206 aaKnown RBP12.59□□□□□ -0.39
PNKP-202ENST00000593706 RNF13O43567 381 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 CH25HO95992 272 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 IFNA14P01570 189 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 TSPAN19P0C672 248 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 THRBP10828 461 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 GSK3BP49841 420 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 HILS1P60008 231 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 LMO4P61968 165 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 SELENOWP63302 87 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 MVKQ03426 396 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 PIN1Q13526 163 aaPredicted RBP12.59□□□□□ -0.39
PNKP-202ENST00000593706 MELKQ14680 651 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 TBC1D28Q2M2D7 210 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 PCGF3Q3KNV8 242 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 TTC33Q6PID6 262 aaPredicted RBP12.59□□□□□ -0.39
PNKP-202ENST00000593706 NKAIN4Q8IVV8 208 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 OR4M2Q8NGB6 313 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 OR6X1Q8NH79 312 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 PFN4Q8NHR9 129 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 FGFBP3Q8TAT2 258 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 SYNPRQ8TBG9 265 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 TMEM255BQ8WV15 326 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 LIPHQ8WWY8 451 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 TMEM54Q969K7 222 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 JMJD8Q96S16 334 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 SH3GL3Q99963 347 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 HOPXQ9BPY8 73 aaPredicted RBP12.59□□□□□ -0.39
PNKP-202ENST00000593706 HINT3Q9NQE9 182 aaKnown RBP12.59□□□□□ -0.39
PNKP-202ENST00000593706 TMEM38BQ9NVV0 291 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 GLTPQ9NZD2 209 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 RIMS3Q9UJD0 308 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 A4GNTQ9UNA3 340 aa12.59□□□□□ -0.39
PNKP-202ENST00000593706 DOCK11Q5JSL3 2073 aa12.58□□□□□ -0.39
PNKP-202ENST00000593706 MPZL1O95297 269 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 CLPTM1O96005 669 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 MT-ND1P03886 318 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 MT-ND5P03915 603 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 CCL2P13500 99 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 NUDT2P50583 147 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 TEKQ02763 1124 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 SLC36A2Q495M3 483 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 ACSM5Q6NUN0 579 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 USP43Q70EL4 1123 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 SLC16A14Q7RTX9 510 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 VTCN1Q7Z7D3 282 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 PEG10Q86TG7 708 aaKnown RBP12.58□□□□□ -0.4
PNKP-202ENST00000593706 PAQR4Q8N4S7 273 aaPredicted RBP12.58□□□□□ -0.4
PNKP-202ENST00000593706 FAM216AQ8WUB2 273 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 C11orf40Q8WZ69 217 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 TSPAN32Q96QS1 320 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 SEPHS2Q99611 448 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 RBM4Q9BWF3 364 aaKnown RBP12.58□□□□□ -0.4
PNKP-202ENST00000593706 SUCNR1Q9BXA5 334 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 EFCAB1Q9HAE3 211 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 NANSQ9NR45 359 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 MAN2C1Q9NTJ4 1040 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 C20orf141Q9NUB4 165 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 DECR2Q9NUI1 292 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 SLCO1C1Q9NYB5 712 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 SNX13Q9Y5W8 968 aa12.58□□□□□ -0.4
PNKP-202ENST00000593706 IGHV1-69-2A0A0G2JMI3 117 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 IQCMA0A1B0GVH7 501 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 CLDN25C9JDP6 229 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 CXCR6O00574 342 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 FFAR1O14842 300 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 DHHO43323 396 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 WIPF1O43516 503 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 PRSS23O95084 383 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 PTHP01270 115 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 UMPSP11172 480 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 ZNF250P15622 560 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 PRDX6P30041 224 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 RAD52P43351 418 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 COMPP49747 757 aaPredicted RBP12.57□□□□□ -0.4
PNKP-202ENST00000593706 ZNF84P51523 738 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 GYS2P54840 703 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 CLRN1P58418 232 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 TAS2R41P59536 307 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 GLO1Q04760 184 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 PLP2Q04941 152 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 NANOGNBQ7Z5D8 188 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 TSEN54Q7Z6J9 526 aaKnown RBP12.57□□□□□ -0.4
PNKP-202ENST00000593706 DPPA2Q7Z7J5 298 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 BPIFB2Q8N4F0 458 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 RBM15BQ8NDT2 890 aaKnown RBP12.57□□□□□ -0.4
PNKP-202ENST00000593706 OR4K5Q8NGD3 323 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 OR1J2Q8NGS2 313 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 ZNF519Q8TB69 540 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 TMEM239Q8WW34 195 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 TIMD4Q96H15 378 aa12.57□□□□□ -0.4
PNKP-202ENST00000593706 SLC25A44Q96H78 314 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms