RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	TBC1D28	Q2M2D7	210 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	TMEM249	Q2WGJ8	235 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	ZBED5	Q49AG3	693 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	C16orf89	Q6UX73	402 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	FOXL2NB	Q6ZUU3	175 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	SYT9	Q86SS6	491 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	SVOPL	Q8N434	492 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	RBM15B	Q8NDT2	890 aa	Known RBP	10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	OR51A7	Q8NH64	312 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	ZNF519	Q8TB69	540 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	HDAC2	Q92769	488 aa	Known RBP	10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	POP5	Q969H6	163 aa	Known RBP	10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	DHRS1	Q96LJ7	313 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	GPX7	Q96SL4	187 aa	Predicted RBP	10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	CDH20	Q9HBT6	801 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	DYNLRB1	Q9NP97	96 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	TMEM160	Q9NX00	188 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	RHCG	Q9UBD6	479 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	CD300A	Q9UGN4	299 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	ZNF346	Q9UL40	294 aa	Known RBP	10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	UGT2A1	Q9Y4X1	527 aa		10.85	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	INAFM1	C9JVW0	142 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708		M0R233	179 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	CST2	P09228	141 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	NCK1	P16333	377 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	APLNR	P35414	380 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	GZMK	P49863	264 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	MRPS11	P82912	194 aa	Known RBP	10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	LSM11	P83369	360 aa	Known RBP eCLIP	10.84	□□□□□ -0.67	3e-9	■■■■■ 29.7
CDK5RAP3-222	ENST00000581708	MYBPC1	Q00872	1141 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	GPR139	Q6DWJ6	353 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	UGT2A3	Q6UWM9	527 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	TSEN54	Q7Z6J9	526 aa	Known RBP	10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	ALDH16A1	Q8IZ83	802 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	ARHGAP24	Q8N264	748 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	ZNF786	Q8N393	782 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	MAPK1IP1L	Q8NDC0	245 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	FGFBP3	Q8TAT2	258 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	HTRA1	Q92743	480 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	NABP1	Q96AH0	204 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	PYURF	Q96I23	114 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	TSPAN32	Q96QS1	320 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	MRPL37	Q9BZE1	423 aa	Known RBP	10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	CCNB1IP1	Q9NPC3	277 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	GRHPR	Q9UBQ7	328 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	REV1	Q9UBZ9	1251 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	EGFL7	Q9UHF1	273 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	ATR	Q13535	2644 aa		10.84	□□□□□ -0.67
CDK5RAP3-222	ENST00000581708	TRAV27	A0A087WT01	109 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708		A8MV72	311 aa	Predicted RBP	10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708		H3BSA7	217 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	XKRY	O14609	159 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	CDC42EP2	O14613	210 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	ICMT	O60725	284 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	NDUFB2	O95178	105 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	SLC2A10	O95528	541 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	PATE4	P0C8F1	98 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	APEH	P13798	732 aa	Known RBP	10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	DAO	P14920	347 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	ZNF250	P15622	560 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	TUBG1	P23258	451 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	RPL4	P36578	427 aa	Known RBP	10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	LIMS1	P48059	325 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	UCP2	P55851	309 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	HSF2	Q03933	536 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	TOP3A	Q13472	1001 aa	Predicted RBP	10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	CYB5R2	Q6BCY4	276 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	RGS7BP	Q6MZT1	257 aa	Predicted RBP	10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	PODNL1	Q6PEZ8	512 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	ADCK1	Q86TW2	530 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	HIPK1	Q86Z02	1210 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	OR13C2	Q8NGS9	318 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	C11orf40	Q8WZ69	217 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	MCUR1	Q96AQ8	359 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	NSMCE2	Q96MF7	247 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	NRIP3	Q9NQ35	241 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	TUBG2	Q9NRH3	451 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	SLCO1C1	Q9NYB5	712 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	SIGLEC7	Q9Y286	467 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	TIMM10B	Q9Y5J6	103 aa		10.83	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	IGLV3-9	A0A075B6K5	115 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	C12orf71	A8MTZ7	269 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	DYNC1I1	O14576	645 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	GPRIN2	O60269	458 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	PTP4A3	O75365	173 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	LY6H	O94772	140 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	STAMBP	O95630	424 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	MT-ND5	P03915	603 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	SEMG1	P04279	462 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	ADRA2A	P08913	450 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	COX5B	P10606	129 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	ZNF23	P17027	643 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	MSR1	P21757	451 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	FUT4	P22083	530 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	STOM	P27105	288 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	SDHA	P31040	664 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	IFNGR2	P38484	337 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	GPR4	P46093	362 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	OMP	P47874	163 aa		10.82	□□□□□ -0.68
CDK5RAP3-222	ENST00000581708	KLF3	P57682	345 aa	Predicted RBP	10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms