RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TRBV2A0A0J9YWF9 115 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 C17orf51A8MQB3 221 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 B4DXG7 233 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 ZNF593O00488 134 aaPredicted RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 EIF1AYO14602 144 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 NKX2-8O15522 239 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SLC43A1O75387 559 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 RGS9O75916 674 aaPredicted RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 PLGP00747 810 aaPredicted RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 APOC1P02654 83 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 RAF1P04049 648 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 GYPBP06028 91 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 MRPL3P09001 348 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 CLUP10909 449 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 ALOX5APP20292 161 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 NPR2P20594 1047 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 MYL9P24844 172 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 LAP3P28838 519 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 PCSK6P29122 969 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 PYCR1P32322 319 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 PTGS2P35354 604 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 CD97P48960 835 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 MTNR1BP49286 362 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 TNFSF10P50591 281 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 ZNF84P51523 738 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 P2RY4P51582 365 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 CCR9P51686 369 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 ZNF133P52736 654 aaPredicted RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 SUCLG1P53597 346 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 BIDP55957 195 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 VBP1P61758 197 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 LSM6P62312 80 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 PPIAP62937 165 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 ADAM8P78325 824 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 ZNF846Q147U1 533 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SLC17A1Q14916 467 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SPCS2Q15005 226 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 RNPS1Q15287 305 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 TGIF1Q15583 401 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 INPP5JQ15735 1006 aaPredicted RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 INAQ16352 499 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SSX1Q16384 188 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 KCNMB1Q16558 191 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 HIST3H3Q16695 136 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 PCK2Q16822 640 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 NRN1LQ496H8 165 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 GXYLT1Q4G148 440 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 YIF1BQ5BJH7 314 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 NKAPLQ5M9Q1 402 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 DMKNQ6E0U4 476 aaPredicted RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 FDX2Q6P4F2 183 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 IGFL3Q6UXB1 125 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 NHLRC1Q6VVB1 395 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 LRRC69Q6ZNQ3 347 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 CREB3L2Q70SY1 520 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 GPAT4Q86UL3 456 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 ZNF679Q8IYX0 411 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 ZADH2Q8N4Q0 377 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 NOXO1Q8NFA2 376 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 OR6N2Q8NGY6 317 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 OR2AJ1Q8NGZ0 328 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 MCFD2Q8NI22 146 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 ACOT12Q8WYK0 555 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 ITFG2Q969R8 447 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SMIM19Q96E16 107 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 C4orf36Q96KX1 117 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SIGLEC12Q96PQ1 595 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SMAD5Q99717 465 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 TTTY12Q9BZ98 90 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 NAA50Q9GZZ1 169 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 COMMD4Q9H0A8 199 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SLITRK2Q9H156 845 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 OR51E2Q9H255 320 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 PLGRKTQ9HBL7 147 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 TPSG1Q9NRR2 321 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 GLRX2Q9NS18 164 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 TXNL4BQ9NX01 149 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 GALNT8Q9NY28 637 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 TAS2R16Q9NYV7 291 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 B3GAT1Q9P2W7 334 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 DKK4Q9UBT3 224 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 GNG8Q9UK08 70 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 MCTS1Q9ULC4 181 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 SF3B6Q9Y3B4 125 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 PCDHGA9Q9Y5G4 932 aaKnown RBP7.11□□□□□ -1.27
VPS39-213ENST00000570062 FER1L5A0AVI2 2057 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 SCN2AQ99250 2005 aa7.11□□□□□ -1.27
VPS39-213ENST00000570062 NINQ8N4C6 2090 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 OTOGLQ3ZCN5 2332 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 A0A0J9YW62 118 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 SCO2A0A1W2PP80 73 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 ACOD1A6NK06 481 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 TMEM212A6NML5 194 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 ZNF879B4DU55 563 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 CLDN25C9JDP6 229 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 G3V3Y1 287 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 TAF4O00268 1085 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 PDCD5O14737 125 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 RRP8O43159 456 aaKnown RBP7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 145.4 ms