RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ZNF226Q9NYT6 803 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 NPAP1Q9NZP6 1156 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 AASSQ9UDR5 926 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 B9D1Q9UPM9 204 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 GPR52Q9Y2T5 361 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 A1L4Q6 167 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 CCDC182A6NF36 153 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 ZNF587BE7ETH6 402 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 H0YHG0 523 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 RAD51DO75771 328 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 GYPBP06028 91 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 MMP7P09237 267 aaPredicted RBP8.12□□□□□ -1.11
VPS35-211ENST00000569950 GNAO1P09471 354 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 B4GALT1P15291 398 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 PYCR1P32322 319 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 SLC25A1P53007 311 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 AQP4P55087 323 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 CLRN1P58418 232 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 MRPS34P82930 218 aaKnown RBP8.12□□□□□ -1.11
VPS35-211ENST00000569950 CD47Q08722 323 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 ENDOGQ14249 297 aaKnown RBP8.12□□□□□ -1.11
VPS35-211ENST00000569950 KCNMB1Q16558 191 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 TBRG1Q3YBR2 411 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 AADACL4Q5VUY2 407 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 LAIR2Q6ISS4 152 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 KLHL24Q6TFL4 600 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 BHLHA15Q7RTS1 189 aaPredicted RBP8.12□□□□□ -1.11
VPS35-211ENST00000569950 HDDC2Q7Z4H3 204 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 SKA3Q8IX90 412 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 DMRTC2Q8IXT2 367 aaPredicted RBP8.12□□□□□ -1.11
VPS35-211ENST00000569950 UBE2J2Q8N2K1 259 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 C1orf162Q8NEQ5 155 aaPredicted RBP8.12□□□□□ -1.11
VPS35-211ENST00000569950 SLC26A10Q8NG04 563 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 OR6N1Q8NGY5 312 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 APH1BQ8WW43 257 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 RDH12Q96NR8 316 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 FOXN4Q96NZ1 517 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 WFIKKN1Q96NZ8 548 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 FOXB1Q99853 325 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 OR10A4Q9H209 315 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 MARCH7Q9H992 704 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 RPRD1BQ9NQG5 326 aaKnown RBP8.12□□□□□ -1.11
VPS35-211ENST00000569950 SLC17A5Q9NRA2 495 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 COA3Q9Y2R0 106 aaPredicted RBP8.12□□□□□ -1.11
VPS35-211ENST00000569950 SLC25A15Q9Y619 301 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 FKBP7Q9Y680 259 aa8.12□□□□□ -1.11
VPS35-211ENST00000569950 A0A096LPE4 126 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 ARPC4-TTLL3A0A0A6YYG9 625 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 A0A1W2PPR1 153 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 A0A1W2PPZ6 126 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 A0A1W2PR80 420 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 OR5H1A6NKK0 313 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 C16orf97H3BN30 126 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 XKRYO14609 159 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 SLC16A7O60669 478 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 WBP4O75554 376 aaKnown RBP8.11□□□□□ -1.11
VPS35-211ENST00000569950 CLIC3O95833 236 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 WNT11O96014 354 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 SPI1P17947 270 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 COL8A1P27658 744 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 SH3BGRP55822 239 aaPredicted RBP8.11□□□□□ -1.11
VPS35-211ENST00000569950 TUBA1BP68363 451 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 TUBA4AP68366 448 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 HIST1H3AP68431 136 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 MEP1BQ16820 701 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 PCK2Q16822 640 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 HIST2H3PS2Q5TEC6 136 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 FAM27BQ5VT28 67 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 HIST2H2BCQ6DN03 193 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 PLBD1Q6P4A8 553 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 ANKRD16Q6P6B7 361 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 B3GLCTQ6Y288 498 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 HIST2H3AQ71DI3 136 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 TUBA1AQ71U36 451 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 ZNF584Q8IVC4 421 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 CPOQ8IVL8 374 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 ENTHD1Q8IYW4 607 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 SLC22A24Q8N4F4 322 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 OR51L1Q8NGJ5 315 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 LINC01560Q8TB33 94 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 TMEM163Q8TC26 289 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 FBLIM1Q8WUP2 373 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 NSMAFQ92636 917 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 TFAP2CQ92754 450 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 FBXO17Q96EF6 278 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 ACTR6Q9GZN1 396 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 SEC61A2Q9H9S3 476 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 EMC7Q9NPA0 242 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 C8orf4Q9NR00 106 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 POLE4Q9NR33 117 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 TVP23BQ9NYZ1 205 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 UPB1Q9UBR1 384 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 KLHL21Q9UJP4 597 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 LHFPL6Q9Y693 200 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 CSMD2Q7Z408 3487 aa8.11□□□□□ -1.11
VPS35-211ENST00000569950 LOC100130705A0A1B0GUX0 176 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 FAM221AA4D161 298 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 RIIAD1A6NNX1 92 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 FAM171A2A8MVW0 826 aa8.1□□□□□ -1.11
VPS35-211ENST00000569950 DEFB108AA8MXU0 73 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms