RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 BMP4P12644 408 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 SMIM11AP58511 58 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 RAP1BP61224 184 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 LCN6P62502 163 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 RAP1AP62834 184 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 SPIBQ01892 262 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 SNTB2Q13425 540 aaKnown RBP12.98□□□□□ -0.33
VPS39-210ENST00000568357 TRIM25Q14258 630 aaKnown RBP12.98□□□□□ -0.33
VPS39-210ENST00000568357 EFNB3Q15768 340 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 SGCAQ16586 387 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 MSMPQ1L6U9 139 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 SLC36A2Q495M3 483 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 FAM205BPQ63HN1 556 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 THSD4Q6ZMP0 1018 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 SLC16A14Q7RTX9 510 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 FAM122BQ7Z309 247 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 ARHGAP24Q8N264 748 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 BCAS4Q8TDM0 211 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 CLPTM1LQ96KA5 538 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 PLK3Q9H4B4 646 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 ZNF442Q9H7R0 627 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 RNF121Q9H920 327 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 GRHPRQ9UBQ7 328 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 IL20RAQ9UHF4 553 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 PMF1-BGLAPU3KQ54 211 aa12.98□□□□□ -0.33
VPS39-210ENST00000568357 HEATR1Q9H583 2144 aaKnown RBP12.97□□□□□ -0.33
VPS39-210ENST00000568357 UNC119BA6NIH7 251 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 RNF223E7ERA6 249 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 GPRIN2O60269 458 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 ENTPD5O75356 428 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 LY6HO94772 140 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 NDUFB2O95178 105 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 CCL2P13500 99 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 NPR2P20594 1047 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 RRM2P31350 389 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 MESTQ5EB52 335 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 FAM27BQ5VT28 67 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 TMEM53Q6P2H8 277 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 TRPM8Q7Z2W7 1104 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 DPPA2Q7Z7J5 298 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 DHFR2Q86XF0 187 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 ZDHHC21Q8IVQ6 265 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 PAQR4Q8N4S7 273 aaPredicted RBP12.97□□□□□ -0.33
VPS39-210ENST00000568357 MAPK1IP1LQ8NDC0 245 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 RSRC1Q96IZ7 334 aaKnown RBP12.97□□□□□ -0.33
VPS39-210ENST00000568357 DOK1Q99704 481 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 REG4Q9BYZ8 158 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 C1orf21Q9H246 121 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 NRIP3Q9NQ35 241 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 FBXL3Q9UKT7 428 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 AURKCQ9UQB9 309 aa12.97□□□□□ -0.33
VPS39-210ENST00000568357 SLC22A23A1A5C7 686 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 VSTM5A8MXK1 200 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 MGRN1O60291 552 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 F12P00748 615 aaPredicted RBP12.96□□□□□ -0.33
VPS39-210ENST00000568357 SCG5P05408 212 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 NR2C1P13056 603 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 LAP3P28838 519 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 EFNA4P52798 201 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 HMGA2P52926 109 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 NUDT6P53370 316 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 SNRPD2P62316 118 aaKnown RBP12.96□□□□□ -0.33
VPS39-210ENST00000568357 LCN8Q6JVE9 175 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 SVOPLQ8N434 492 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 CPEB3Q8NE35 698 aaKnown RBP12.96□□□□□ -0.33
VPS39-210ENST00000568357 SLC30A7Q8NEW0 376 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 OR10H5Q8NGA6 315 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 FNDC8Q8TC99 324 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 RASD2Q96D21 266 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 SORCS2Q96PQ0 1159 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 GPX7Q96SL4 187 aaPredicted RBP12.96□□□□□ -0.33
VPS39-210ENST00000568357 PRPF19Q9UMS4 504 aaKnown RBP12.96□□□□□ -0.33
VPS39-210ENST00000568357 SPEF1Q9Y4P9 236 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 IER3IP1Q9Y5U9 82 aa12.96□□□□□ -0.33
VPS39-210ENST00000568357 IGHV4-30-2A0A087WSY4 118 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 TEX13CA0A0J9YWL9 993 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 PRSS37A4D1T9 235 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 IMPA2O14732 288 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 OR10H3O60404 316 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 UBOX5O94941 541 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 IGFBP1P08833 259 aaPredicted RBP12.95□□□□□ -0.34
VPS39-210ENST00000568357 ZNF32P17041 273 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 GLRXP35754 106 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 MAGEA2P43356 314 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 GALK2Q01415 458 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 RFX4Q33E94 735 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 MTX3Q5HYI7 312 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 PABPC1L2AQ5JQF8 200 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 DPY19L2P2Q6ZN68 376 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 FOXL2NBQ6ZUU3 175 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 ZCCHC24Q8N2G6 241 aaKnown RBP12.95□□□□□ -0.34
VPS39-210ENST00000568357 ZNF525Q8N782 197 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 ZNF570Q96NI8 536 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 VRK1Q99986 396 aaPredicted RBP12.95□□□□□ -0.34
VPS39-210ENST00000568357 MRPL37Q9BZE1 423 aaKnown RBP12.95□□□□□ -0.34
VPS39-210ENST00000568357 KCNN2Q9H2S1 579 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 MUC13Q9H3R2 512 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 KRCC1Q9NPI7 259 aaPredicted RBP12.95□□□□□ -0.34
VPS39-210ENST00000568357 TMCC3Q9ULS5 477 aa12.95□□□□□ -0.34
VPS39-210ENST00000568357 CMAHPQ9Y471 501 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms