RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZNF878C9JN71 531 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 F6UB75 175 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 UBXN8O00124 270 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 FOXE1O00358 373 aaPredicted RBP1.22□□□□□ -2.21
VPS35-207ENST00000568191 MGRN1O60291 552 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 IDH1O75874 414 aaKnown RBP1.22□□□□□ -2.21
VPS35-207ENST00000568191 HLA-DPB1P04440 258 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 BCHEP06276 602 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 GLAP06280 429 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 AK4P27144 223 aaPredicted RBP1.22□□□□□ -2.21
VPS35-207ENST00000568191 HRH1P35367 487 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 TGFBR1P36897 503 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 CSNK1A1P48729 337 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 LOXL1Q08397 574 aaPredicted RBP1.22□□□□□ -2.21
VPS35-207ENST00000568191 CASC1Q6TDU7 716 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 TMEM179Q6ZVK1 233 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 LHFPL3Q86UP9 236 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 CALHM1Q8IU99 346 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 ARL6IP6Q8N6S5 226 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 TEX9Q8N6V9 391 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 LRRC52Q8N7C0 313 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 OR1L6Q8NGR2 347 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 OR1L4Q8NGR5 311 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 SYAP1Q96A49 352 aaPredicted RBP1.22□□□□□ -2.21
VPS35-207ENST00000568191 TBC1D31Q96DN5 1066 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 COQ2Q96H96 371 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 RBM14Q96PK6 669 aaKnown RBP1.22□□□□□ -2.21
VPS35-207ENST00000568191 COPS8Q99627 209 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 TMEM43Q9BTV4 400 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 TMEM59Q9BXS4 323 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 PARD6BQ9BYG5 372 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 FRMD8P1Q9BZ68 369 aaPredicted RBP1.22□□□□□ -2.21
VPS35-207ENST00000568191 MRPL37Q9BZE1 423 aaKnown RBP1.22□□□□□ -2.21
VPS35-207ENST00000568191 RIBC2Q9H4K1 309 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 FN3KRPQ9HA64 309 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 NMRAL1Q9HBL8 299 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 CTSFQ9UBX1 484 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 ZNF391Q9UJN7 358 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 TMCC3Q9ULS5 477 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 SDK2Q58EX2 2172 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 CAMTA1Q9Y6Y1 1673 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 PNPLA6Q8IY17 1366 aa1.21□□□□□ -2.21
VPS35-207ENST00000568191 SHROOM3Q8TF72 1996 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 OTOGLQ3ZCN5 2332 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 TRAV26-1A0A087WT03 109 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 A0A0B4J2A0 478 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 BTBD17A6NE02 478 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 CCL21O00585 134 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 HMMRO75330 724 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 CAPN1P07384 714 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 DCKP27707 260 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 FDFT1P37268 417 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 OPRK1P41145 380 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 GRIA1P42261 906 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 CDKN2BP42772 138 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 ZNF138P52744 262 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 UGT2B15P54855 530 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 NUTF2P61970 127 aaKnown RBP1.21□□□□□ -2.22
VPS35-207ENST00000568191 ZNF92Q03936 586 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 CDC20Q12834 499 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 MAB21L1Q13394 359 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 RGNQ15493 299 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 OR2A2Q6IF42 318 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 PRMT9Q6P2P2 845 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 PLET1Q6UQ28 207 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 TMEM104Q8NE00 496 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 OR2G2Q8NGZ5 317 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 ABHD3Q8WU67 409 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 PLEKHA8Q96JA3 519 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 SH3GL3Q99963 347 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 TCHPQ9BT92 498 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 TEKT3Q9BXF9 490 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 SYNDIG1Q9H7V2 258 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 FAM49BQ9NUQ9 324 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 EPS15L1Q9UBC2 864 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 SHPKQ9UHJ6 478 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 CDH9Q9ULB4 789 aa1.21□□□□□ -2.22
VPS35-207ENST00000568191 KIF16BQ96L93 1317 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 TRIM64CA6NLI5 447 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 GOSR2O14653 212 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 CPLX1O14810 134 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 ANGPT2O15123 496 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 ZNF208O43345 1280 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 TIMM8AO60220 97 aaPredicted RBP1.2□□□□□ -2.22
VPS35-207ENST00000568191 RP2O75695 350 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 CCNE2O96020 404 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 CT62P0C5K7 136 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 P0C880 135 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 ETS2P15036 469 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 SLC11A1P49279 550 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 CDH4P55283 916 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 FGL1Q08830 312 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 IFT88Q13099 833 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 GK3PQ14409 553 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 PON2Q15165 354 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 PSTKQ8IV42 348 aaKnown RBP1.2□□□□□ -2.22
VPS35-207ENST00000568191 MIR7-3HGQ8N6C7 128 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 OR8J1Q8NGP2 316 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 COQ8AQ8NI60 647 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 CIRBP-AS1Q8TBR5 109 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms