RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 THEM4Q5T1C6 240 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 SLC25A47Q6Q0C1 308 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 MBOAT2Q6ZWT7 520 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 ZNF786Q8N393 782 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 OR51B6Q9H340 312 aa17.83■□□□□ 0.44
CLN3-219ENST00000565778 FAM32AQ9Y421 112 aaKnown RBP17.83■□□□□ 0.44
CLN3-219ENST00000565778 IGKV1D-43A0A0B4J1Z2 117 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 GMNCA6NCL1 334 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 SNX3O60493 162 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 LCKP06239 509 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 DRD4P21917 467 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 APLNRP35414 380 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 RAD52P43351 418 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 ALDH3B1P43353 468 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 ANKDD1AQ495B1 522 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 RGS7BPQ6MZT1 257 aaPredicted RBP17.82■□□□□ 0.44
CLN3-219ENST00000565778 PAQR4Q8N4S7 273 aaPredicted RBP17.82■□□□□ 0.44
CLN3-219ENST00000565778 FNDC8Q8TC99 324 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 ALG12Q9BV10 488 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 NMNAT1Q9HAN9 279 aaPredicted RBP17.82■□□□□ 0.44
CLN3-219ENST00000565778 SPAG4Q9NPE6 437 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 ABCD2Q9UBJ2 740 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 UGT2A1Q9Y4X1 527 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 ENPP4Q9Y6X5 453 aa17.82■□□□□ 0.44
CLN3-219ENST00000565778 LOC100289279A0A1B0GTE1 492 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 A0A1W2PPW3 197 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 A6NIZ1 184 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 LYNX1G3V0Z9 82 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 LMX1BO60663 402 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 PRSS23O95084 383 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 IFNA2P01563 188 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 MMP7P09237 267 aaPredicted RBP17.81■□□□□ 0.44
CLN3-219ENST00000565778 LYNX1P0DP58 116 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 ZNF16P17020 682 aaPredicted RBP17.81■□□□□ 0.44
CLN3-219ENST00000565778 ZNF23P17027 643 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 CCNOP22674 350 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 GIFP27352 417 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 APEX1P27695 318 aaKnown RBP17.81■□□□□ 0.44
CLN3-219ENST00000565778 RPL4P36578 427 aaKnown RBP17.81■□□□□ 0.44
CLN3-219ENST00000565778 GPR4P46093 362 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 SLC9A3P48764 834 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 UCP2P55851 309 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 RAP1BP61224 184 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 RAP1AP62834 184 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 MAD2L1BPQ15013 274 aaPredicted RBP17.81■□□□□ 0.44
CLN3-219ENST00000565778 PABPC1L2AQ5JQF8 200 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 FAM205BPQ63HN1 556 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 RNF148Q8N7C7 305 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 CLDN22Q8N7P3 220 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 LRRC75AQ8NAA5 344 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 ICA1LQ8NDH6 482 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 OR13C2Q8NGS9 318 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 C11orf40Q8WZ69 217 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 NMD3Q96D46 503 aaKnown RBP17.81■□□□□ 0.44
CLN3-219ENST00000565778 BEX2Q9BXY8 128 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 MYEF2Q9P2K5 600 aaKnown RBP17.81■□□□□ 0.44
CLN3-219ENST00000565778 CDC42EP3Q9UKI2 254 aa17.81■□□□□ 0.44
CLN3-219ENST00000565778 IGHMP01871 453 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 ZNF32P17041 273 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 ERVK-25P63136 954 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 FHL1Q13642 323 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 ALKBH6Q3KRA9 238 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 ZBED5Q49AG3 693 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 TMPRSS11FQ6ZWK6 438 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 TSEN54Q7Z6J9 526 aaKnown RBP17.8■□□□□ 0.44
CLN3-219ENST00000565778 ARIH2OSQ8N7S6 290 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 CPEB3Q8NE35 698 aaKnown RBP17.8■□□□□ 0.44
CLN3-219ENST00000565778 SYNPRQ8TBG9 265 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 NABP1Q96AH0 204 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 MSI2Q96DH6 328 aaKnown RBP17.8■□□□□ 0.44
CLN3-219ENST00000565778 TSPAN32Q96QS1 320 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 MDFIQ99750 246 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 ANKRD19PQ9H560 264 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 TAAR3PQ9P1P4 343 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 GRHPRQ9UBQ7 328 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 GPR160Q9UJ42 338 aa17.8■□□□□ 0.44
CLN3-219ENST00000565778 CHD3Q12873 2000 aaKnown RBP17.8■□□□□ 0.44
CLN3-219ENST00000565778 SONP18583 2426 aaKnown RBP17.79■□□□□ 0.44
CLN3-219ENST00000565778 LRP5LA4QPB2 252 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 CDC42EP2O14613 210 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 SNAP29O95721 258 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 CLPTM1O96005 669 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 H1F0P07305 194 aaKnown RBP17.79■□□□□ 0.44
CLN3-219ENST00000565778 NAT2P11245 290 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 STOMP27105 288 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 NKPD1Q17RQ9 610 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 FAM27BQ5VT28 67 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 FAM166AQ6J272 317 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 PODNL1Q6PEZ8 512 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 ZNF519Q8TB69 540 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 BCL2L14Q9BZR8 327 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 SHARPINQ9H0F6 387 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 DCAF13Q9NV06 445 aaKnown RBP17.79■□□□□ 0.44
CLN3-219ENST00000565778 TMEM160Q9NX00 188 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 EIF3KQ9UBQ5 218 aaKnown RBP17.79■□□□□ 0.44
CLN3-219ENST00000565778 KCNS2Q9ULS6 477 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 SAMD4AQ9UPU9 718 aaKnown RBP17.79■□□□□ 0.44
CLN3-219ENST00000565778 TMEM5Q9Y2B1 443 aa17.79■□□□□ 0.44
CLN3-219ENST00000565778 A0A1W2PPL8 197 aa17.78■□□□□ 0.44
CLN3-219ENST00000565778 TGFAP01135 160 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms