RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 HTR3EA5X5Y0 456 aa16■□□□□ 0.15
CLN3-218ENST00000565688 HAX1O00165 279 aa16■□□□□ 0.15
CLN3-218ENST00000565688 FXYD1O00168 92 aa16■□□□□ 0.15
CLN3-218ENST00000565688 MMP7P09237 267 aaPredicted RBP16■□□□□ 0.15
CLN3-218ENST00000565688 GAAP10253 952 aa16■□□□□ 0.15
CLN3-218ENST00000565688 DRD4P21917 467 aa16■□□□□ 0.15
CLN3-218ENST00000565688 MAGEB1P43366 347 aa16■□□□□ 0.15
CLN3-218ENST00000565688 CCL8P80075 99 aa16■□□□□ 0.15
CLN3-218ENST00000565688 PIN1Q13526 163 aaPredicted RBP16■□□□□ 0.15
CLN3-218ENST00000565688 TAF11Q15544 211 aa16■□□□□ 0.15
CLN3-218ENST00000565688 MAPRE2Q15555 327 aa16■□□□□ 0.15
CLN3-218ENST00000565688 ARMC4Q5T2S8 1044 aa16■□□□□ 0.15
CLN3-218ENST00000565688 UNQ6126/PRO20091Q6UXV3 157 aa16■□□□□ 0.15
CLN3-218ENST00000565688 CCNB1IP1Q9NPC3 277 aa16■□□□□ 0.15
CLN3-218ENST00000565688 ARGLU1Q9NWB6 273 aaPredicted RBP16■□□□□ 0.15
CLN3-218ENST00000565688 TREM2Q9NZC2 230 aa16■□□□□ 0.15
CLN3-218ENST00000565688 A0A0A6YYJ9 748 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 FAM157AC9JC47 383 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 MRASO14807 208 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 TROVE2P10155 538 aaKnown RBP eCLIP15.99■□□□□ 0.15
CLN3-218ENST00000565688 ANPEPP15144 967 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 TNFRSF1BP20333 461 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 STOMP27105 288 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 IFNA8P32881 189 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 ERVS71-1P61550 626 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 PABPC1L2AQ5JQF8 200 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 TEX29Q8N6K0 151 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 PCYOX1LQ8NBM8 494 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 ICA1LQ8NDH6 482 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 MOSPD2Q8NHP6 518 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 C10orf82Q8WW14 230 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 ZNF583Q96ND8 569 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 TXNIPQ9H3M7 391 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 DECR2Q9NUI1 292 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 GID8Q9NWU2 228 aa15.99■□□□□ 0.15
CLN3-218ENST00000565688 EIF3KQ9UBQ5 218 aaKnown RBP15.99■□□□□ 0.15
CLN3-218ENST00000565688 TRAV20A0A0B4J274 112 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 WNT9BO14905 357 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 SHOX2O60902 331 aaPredicted RBP15.98■□□□□ 0.15
CLN3-218ENST00000565688 SLC2A10O95528 541 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 IGHV3-13P01766 116 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 ITGA2P17301 1181 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 CRYBB2P43320 205 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 OR1E2P47887 323 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 LMO4P61968 165 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 CD47Q08722 323 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 ST3GAL3Q11203 375 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 CYBRD1Q53TN4 286 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 SHQ1Q6PI26 577 aaKnown RBP15.98■□□□□ 0.15
CLN3-218ENST00000565688 C1orf174Q8IYL3 243 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 CPEB3Q8NE35 698 aaKnown RBP15.98■□□□□ 0.15
CLN3-218ENST00000565688 OR1J1Q8NGS3 322 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 FNDC8Q8TC99 324 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 NMD3Q96D46 503 aaKnown RBP15.98■□□□□ 0.15
CLN3-218ENST00000565688 LRRC37BQ96QE4 947 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 TSPAN32Q96QS1 320 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 METTL17Q9H7H0 456 aaPredicted RBP15.98■□□□□ 0.15
CLN3-218ENST00000565688 LPAR2Q9HBW0 351 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 HIF3AQ9Y2N7 669 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 UGT2A1Q9Y4X1 527 aa15.98■□□□□ 0.15
CLN3-218ENST00000565688 IGHV1-69-2A0A0G2JMI3 117 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 FAM220BPB1ANY3 271 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 TPD52L2O43399 206 aaKnown RBP15.97■□□□□ 0.15
CLN3-218ENST00000565688 CDC14BO60729 498 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 CCNOP22674 350 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 CDAP32320 146 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 KDELR2P33947 212 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 GUCA1AP43080 201 aaPredicted RBP15.97■□□□□ 0.15
CLN3-218ENST00000565688 KLF10Q13118 480 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 LAPTM4AQ15012 233 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 SGCAQ16586 387 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 ZNF718Q3SXZ3 478 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 LRRC23Q53EV4 343 aaPredicted RBP15.97■□□□□ 0.15
CLN3-218ENST00000565688 ALG10Q5BKT4 473 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 FAM209AQ5JX71 171 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 THEM4Q5T1C6 240 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 FAM27BQ5VT28 67 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 FAM205BPQ63HN1 556 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 HDAC2Q92769 488 aaKnown RBP15.97■□□□□ 0.15
CLN3-218ENST00000565688 NABP1Q96AH0 204 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 BPIFA2Q96DR5 249 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 RBP7Q96R05 134 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 ALG12Q9BV10 488 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 OCEL1Q9H607 264 aa15.97■□□□□ 0.15
CLN3-218ENST00000565688 ZNF32P17041 273 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 GCH1P30793 250 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 GDI2P50395 445 aaKnown RBP15.96■□□□□ 0.15
CLN3-218ENST00000565688 ARFIP2P53365 341 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 RPL27P61353 136 aaKnown RBP15.96■□□□□ 0.15
CLN3-218ENST00000565688 FMODQ06828 376 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 HFEQ30201 348 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 ACSM5Q6NUN0 579 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 SLC25A47Q6Q0C1 308 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 ALDH16A1Q8IZ83 802 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 OR2T12Q8NG77 320 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 ZFAND2BQ8WV99 257 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 LZICQ8WZA0 190 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 NSMAFQ92636 917 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 RAB39BQ96DA2 213 aa15.96■□□□□ 0.15
CLN3-218ENST00000565688 TIMD4Q96H15 378 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms