RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 COQ5Q5HYK3 327 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 LRRC18Q8N456 261 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 MOSPD2Q8NHP6 518 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 SNX33Q8WV41 574 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 NABP1Q96AH0 204 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 LRRC58Q96CX6 371 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 LRRC37BQ96QE4 947 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 OR51B6Q9H340 312 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 METTL17Q9H7H0 456 aaPredicted RBP14.6□□□□□ -0.07
CLN3-216ENST00000565316 TRAV20A0A0B4J274 112 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 VENTXO95231 258 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 NPPAP01160 153 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 TNFRSF1BP20333 461 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 APLNRP35414 380 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 TEKQ02763 1124 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 HSF2Q03933 536 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 PABPC1L2AQ5JQF8 200 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 SEMA6DQ8NFY4 1073 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 HDAC2Q92769 488 aaKnown RBP14.59□□□□□ -0.07
CLN3-216ENST00000565316 POM121L2Q96KW2 1035 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 ZNF583Q96ND8 569 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 ECSITQ9BQ95 431 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 TXNIPQ9H3M7 391 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 LPAR2Q9HBW0 351 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 G6PC2Q9NQR9 355 aa14.59□□□□□ -0.07
CLN3-216ENST00000565316 IGKV1D-43A0A0B4J1Z2 117 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 IGHV1-69-2A0A0G2JMI3 117 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 CDC14BO60729 498 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 DEAF1O75398 565 aaPredicted RBP14.58□□□□□ -0.08
CLN3-216ENST00000565316 SLC2A10O95528 541 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 STOMP27105 288 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 CDAP32320 146 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 SCGB2A2Q13296 93 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 LAPTM4AQ15012 233 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 TAF11Q15544 211 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 ERICH5Q6P6B1 374 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 SLC25A47Q6Q0C1 308 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.58□□□□□ -0.08
CLN3-216ENST00000565316 GTF3AQ92664 365 aaKnown RBP14.58□□□□□ -0.08
CLN3-216ENST00000565316 KCNN2Q9H2S1 579 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 ZNF665Q9H7R5 613 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 VIPAS39Q9H9C1 493 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 HIF3AQ9Y2N7 669 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 MED31Q9Y3C7 131 aa14.58□□□□□ -0.08
CLN3-216ENST00000565316 LOC100509620A0A075B734 347 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 HTR3EA5X5Y0 456 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 ICMTO60725 284 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 SHOX2O60902 331 aaPredicted RBP14.57□□□□□ -0.08
CLN3-216ENST00000565316 IFNA14P01570 189 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 ANPEPP15144 967 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 ZNF32P17041 273 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 WNT5AP41221 380 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 OR1E2P47887 323 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 FAM27BQ5VT28 67 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 ACSM5Q6NUN0 579 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 C1orf229Q6ZS94 237 aaPredicted RBP14.57□□□□□ -0.08
CLN3-216ENST00000565316 HDXQ7Z353 690 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 ZNF101Q8IZC7 436 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 OR1J1Q8NGS3 322 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 C10orf82Q8WW14 230 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 MARS2Q96GW9 593 aaKnown RBP14.57□□□□□ -0.08
CLN3-216ENST00000565316 ALG12Q9BV10 488 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 TMEM120AQ9BXJ8 343 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 OCEL1Q9H607 264 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 MRGBPQ9NV56 204 aa14.57□□□□□ -0.08
CLN3-216ENST00000565316 GMNCA6NCL1 334 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 PNPP00491 289 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 IGHMP01871 453 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 MT-ND5P03915 603 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 NR2C1P13056 603 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 DRD4P21917 467 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 MMP15P51511 669 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 PSG4Q00888 419 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 MVKQ03426 396 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 FMODQ06828 376 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 ZNF718Q3SXZ3 478 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 CYBRD1Q53TN4 286 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 TMEM255AQ5JRV8 349 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 FAM209AQ5JX71 171 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 THEM4Q5T1C6 240 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 AVPI1Q5T686 147 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 MBNL2Q5VZF2 373 aaKnown RBP14.56□□□□□ -0.08
CLN3-216ENST00000565316 FAHD2BQ6P2I3 314 aaPredicted RBP14.56□□□□□ -0.08
CLN3-216ENST00000565316 USP51Q70EK9 711 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 C1orf174Q8IYL3 243 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 TEX29Q8N6K0 151 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 ICA1LQ8NDH6 482 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 FAHD2AQ96GK7 314 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 CCNB1IP1Q9NPC3 277 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 DECR2Q9NUI1 292 aa14.56□□□□□ -0.08
CLN3-216ENST00000565316 BBIP1A8MTZ0 92 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 MRASO14807 208 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 PLPP2O43688 288 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 AVPP01185 164 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 IGHV2-5P01817 119 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 ADH4P08319 380 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 KDELR2P33947 212 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 MPV17P39210 176 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 ZNF81P51508 661 aa14.55□□□□□ -0.08
CLN3-216ENST00000565316 GLO1Q04760 184 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms