RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PGA3P0DJD8 388 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 CCL3P10147 92 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 CD8BP10966 210 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SLC2A2P11168 524 aaPredicted RBP6.73□□□□□ -1.33
VPS39-204ENST00000561818 IMPDH2P12268 514 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 FCGR2AP12318 317 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SRMP19623 302 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ENPP1P22413 925 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 MNDAP41218 407 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 CSNK1A1P48729 337 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 PITPNBP48739 271 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 BIDP55957 195 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SPEM2Q0P670 501 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ASAH1Q13510 395 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SLC17A1Q14916 467 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SF3B4Q15427 424 aaKnown RBP eCLIP6.73□□□□□ -1.335e-6■■■■□ 20.8
VPS39-204ENST00000561818 HIST3H3Q16695 136 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 MS4A18Q3C1V0 323 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 TMEM176BQ3YBM2 270 aaPredicted RBP6.73□□□□□ -1.33
VPS39-204ENST00000561818 TP53I3Q53FA7 332 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 UBE2NLQ5JXB2 153 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 C10orf128Q5T292 105 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 STPG1Q5TH74 334 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 GLT8D1Q68CQ7 371 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 BICRALQ6AI39 1079 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 VASNQ6EMK4 673 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 TMEM91Q6ZNR0 172 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 DPY19L4Q7Z388 723 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SYT9Q86SS6 491 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SLC22A16Q86VW1 577 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ZNF227Q86WZ6 799 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 LYSMD2Q8IV50 215 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 CENPSQ8N2Z9 138 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 POC5Q8NA72 575 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 OR2G2Q8NGZ5 317 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ZNF671Q8TAW3 534 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 POC1BQ8TC44 478 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ADAMTS17Q8TE56 1095 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 RNF133Q8WVZ7 376 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 PHF21AQ96BD5 680 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 THOC3Q96J01 351 aaKnown RBP6.73□□□□□ -1.33
VPS39-204ENST00000561818 C4orf45Q96LM5 186 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SFXN2Q96NB2 322 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 TIMP4Q99727 224 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 KCNS3Q9BQ31 491 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 MRPL13Q9BYD1 178 aaKnown RBP6.73□□□□□ -1.33
VPS39-204ENST00000561818 OR11A1Q9GZK7 315 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 NELFAQ9H3P2 528 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 CYSLTR2Q9NS75 346 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ZNF275Q9NSD4 429 aaPredicted RBP6.73□□□□□ -1.33
VPS39-204ENST00000561818 STMN3Q9NZ72 180 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 MCTS1Q9ULC4 181 aaKnown RBP6.73□□□□□ -1.33
VPS39-204ENST00000561818 HHLA2Q9UM44 414 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 R4GMQ9 66 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 V9GY05 133 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 OR2M5A3KFT3 312 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 OR5H15A6NDH6 313 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 CD8B2A6NJW9 211 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 DHRS7CA6NNS2 312 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 CDRT15L2A8MXV6 281 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 FAM25AB3EWG3 89 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 FAM25CB3EWG5 89 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 FAM25GB3EWG6 89 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 J3QRK9 145 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 TRAF3IP2O43734 574 aaPredicted RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 GMFGO60234 142 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 UPK3AO75631 287 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 AKR7A3O95154 331 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 ZFPL1O95159 310 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 SYNGR4O95473 234 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 LALBAP00709 142 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 HPNP05981 417 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 GSTT2BP0CG30 244 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 TRAPPC2P0DI81 140 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 TRAPPC2BP0DI82 140 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 CTLA4P16410 223 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 POU3F2P20265 443 aaPredicted RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 MSR1P21757 451 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 ITGA3P26006 1051 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 HSD11B1P28845 292 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 FAUP35544 74 aaKnown RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 EVX1P49640 407 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 SUCLG1P53597 346 aaKnown RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 CARD18P57730 90 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 PSMA6P60900 246 aaKnown RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 GABREP78334 506 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 SSBP1Q04837 148 aaKnown RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 MXD1Q05195 221 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 EIF2B1Q14232 305 aaKnown RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 RNPS1Q15287 305 aaKnown RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 MEP1BQ16820 701 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 PYDC2Q56P42 97 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 C1QTNF12Q5T7M4 302 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 BCL2L15Q5TBC7 163 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 PRAMEF20Q5VT98 475 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 OR5M10Q6IEU7 315 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 DHRS13Q6UX07 377 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 CHMP1BQ7LBR1 199 aa6.72□□□□□ -1.33
VPS39-204ENST00000561818 TIPARPQ7Z3E1 657 aaKnown RBP6.72□□□□□ -1.33
VPS39-204ENST00000561818 OR8H2Q8N162 312 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms