RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 INTS11Q5TA45 600 aaKnown RBP9.92□□□□□ -0.82
USP3-220ENST00000561381 TMEM154Q6P9G4 183 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 DEF8Q6ZN54 512 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 C1orf229Q6ZS94 237 aaPredicted RBP9.92□□□□□ -0.82
USP3-220ENST00000561381 CALHM3Q86XJ0 350 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 ZNF519Q8TB69 540 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 TSPEARQ8WU66 669 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 C11orf40Q8WZ69 217 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 HDAC2Q92769 488 aaKnown RBP9.92□□□□□ -0.82
USP3-220ENST00000561381 SGTBQ96EQ0 304 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 ZNF416Q9BWM5 594 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 INIPQ9NRY2 104 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 RIMS3Q9UJD0 308 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 UGT2A1Q9Y4X1 527 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 NBEAL1Q6ZS30 2694 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 ANK2Q01484 3957 aa9.92□□□□□ -0.82
USP3-220ENST00000561381 IQCMA0A1B0GVH7 501 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 PIP5K1CO60331 668 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 PCMT1P22061 227 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 FUT4P22083 530 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 CCNOP22674 350 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 RAD52P43351 418 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 OR1E2P47887 323 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 ZNF84P51523 738 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 ZNF133P52736 654 aaPredicted RBP9.91□□□□□ -0.82
USP3-220ENST00000561381 SELENOVP59797 346 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 HSF2Q03933 536 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 PLP2Q04941 152 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 SF3A3Q12874 501 aaKnown RBP eCLIP9.91□□□□□ -0.821e-7■■■■□ 19.8
USP3-220ENST00000561381 HNRNPA0Q13151 305 aaKnown RBP9.91□□□□□ -0.82
USP3-220ENST00000561381 TSTQ16762 297 aaKnown RBP9.91□□□□□ -0.82
USP3-220ENST00000561381 NRN1LQ496H8 165 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 PABPC1L2AQ5JQF8 200 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 SPATA46Q5T0L3 261 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 C10orf128Q5T292 105 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 FAHD2BQ6P2I3 314 aaPredicted RBP9.91□□□□□ -0.82
USP3-220ENST00000561381 USP51Q70EK9 711 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 DPPA2Q7Z7J5 298 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 MEX3DQ86XN8 651 aaKnown RBP9.91□□□□□ -0.82
USP3-220ENST00000561381 ZNF101Q8IZC7 436 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 CLDN22Q8N7P3 220 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 SEMA6DQ8NFY4 1073 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 OR1J1Q8NGS3 322 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 OR51F2Q8NH61 342 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 TMEM239Q8WW34 195 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 NSMAFQ92636 917 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 NABP1Q96AH0 204 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 LRRC58Q96CX6 371 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 NMD3Q96D46 503 aaKnown RBP9.91□□□□□ -0.82
USP3-220ENST00000561381 FAHD2AQ96GK7 314 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 C1orf198Q9H425 327 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 ZNF665Q9H7R5 613 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 GRIP1Q9Y3R0 1128 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 ARHGAP32A7KAX9 2087 aa9.91□□□□□ -0.82
USP3-220ENST00000561381 WNK2Q9Y3S1 2297 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 LOC100509620A0A075B734 347 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 LOC105371242A0A075B767 164 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 IGHV1-69-2A0A0G2JMI3 117 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 HMGB1P1B2RPK0 211 aaPredicted RBP9.9□□□□□ -0.82
USP3-220ENST00000561381 MGRN1O60291 552 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 OR5F1O95221 314 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 PTHP01270 115 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 TSPAN19P0C672 248 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 ZNF32P17041 273 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 STOMP27105 288 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 APLNRP35414 380 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 RBMXP38159 391 aaKnown RBP9.9□□□□□ -0.82
USP3-220ENST00000561381 MPV17P39210 176 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 WNT5AP41221 380 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 RBM34P42696 430 aaKnown RBP9.9□□□□□ -0.82
USP3-220ENST00000561381 CRYBB2P43320 205 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 DAP3P51398 398 aaKnown RBP9.9□□□□□ -0.82
USP3-220ENST00000561381 MRPS34P82930 218 aaKnown RBP9.9□□□□□ -0.82
USP3-220ENST00000561381 TOP3AQ13472 1001 aaPredicted RBP9.9□□□□□ -0.82
USP3-220ENST00000561381 CYLC2Q14093 348 aaPredicted RBP9.9□□□□□ -0.82
USP3-220ENST00000561381 SHQ1Q6PI26 577 aaKnown RBP9.9□□□□□ -0.82
USP3-220ENST00000561381 ZNF771Q7L3S4 317 aaPredicted RBP9.9□□□□□ -0.82
USP3-220ENST00000561381 OR1J2Q8NGS2 313 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 AKR7LQ8NHP1 331 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 SNX33Q8WV41 574 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 RASSF5Q8WWW0 418 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 POM121L2Q96KW2 1035 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 ECSITQ9BQ95 431 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 TMEM120AQ9BXJ8 343 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 BCL2L14Q9BZR8 327 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 LRMDAQ9H2I8 198 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 SIAEQ9HAT2 523 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 CCNB1IP1Q9NPC3 277 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 G6PC2Q9NQR9 355 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 SLCO1C1Q9NYB5 712 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 NKIRAS2Q9NYR9 191 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 GPR160Q9UJ42 338 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 WIPI2Q9Y4P8 454 aa9.9□□□□□ -0.82
USP3-220ENST00000561381 TRAV20A0A0B4J274 112 aa9.89□□□□□ -0.83
USP3-220ENST00000561381 C5orf49A4QMS7 147 aa9.89□□□□□ -0.83
USP3-220ENST00000561381 CENPBD1B2RD01 187 aa9.89□□□□□ -0.83
USP3-220ENST00000561381 TPD52L2O43399 206 aaKnown RBP9.89□□□□□ -0.83
USP3-220ENST00000561381 SPRY3O43610 288 aa9.89□□□□□ -0.83
USP3-220ENST00000561381 PLPP2O43688 288 aa9.89□□□□□ -0.83
USP3-220ENST00000561381 DEAF1O75398 565 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms