RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	ARMCX1	Q9P291	453 aa		12.12	□□□□□ -0.47
TPM1-223	ENST00000560445	CGGBP1	Q9UFW8	167 aa	Predicted RBP	12.12	□□□□□ -0.47
TPM1-223	ENST00000560445	RPS6KA6	Q9UK32	745 aa		12.12	□□□□□ -0.47
TPM1-223	ENST00000560445	FAM32A	Q9Y421	112 aa	Known RBP	12.12	□□□□□ -0.47
TPM1-223	ENST00000560445	YLPM1	P49750	1951 aa	Known RBP	12.12	□□□□□ -0.47
TPM1-223	ENST00000560445		H3BSA7	217 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	XKRY	O14609	159 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	AHCYL1	O43865	530 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	ZNF682	O95780	498 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	IGHM	P01871	453 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	TF	P02787	698 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	LCK	P06239	509 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	COX4I1	P13073	169 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	TNFRSF1B	P20333	461 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	GPR6	P46095	362 aa	Predicted RBP	12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	GDI2	P50395	445 aa	Known RBP	12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	TMEM33	P57088	247 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	RPL27	P61353	136 aa	Known RBP	12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	LIPE	Q05469	1076 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	ARMC4	Q5T2S8	1044 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	ZNF730	Q6ZMV8	503 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	OAF	Q86UD1	273 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	TSPYL5	Q86VY4	417 aa	Predicted RBP	12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	ACOT11	Q8WXI4	607 aa	Predicted RBP	12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	MSI2	Q96DH6	328 aa	Known RBP	12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	ZNF347	Q96SE7	839 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	NSRP1	Q9H0G5	558 aa	Known RBP	12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	HINT3	Q9NQE9	182 aa	Known RBP	12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	CYSLTR2	Q9NS75	346 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	C20orf141	Q9NUB4	165 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	NKIRAS2	Q9NYR9	191 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	MXRA5	Q9NR99	2828 aa		12.11	□□□□□ -0.47
TPM1-223	ENST00000560445	PLSCR5	A0PG75	271 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	C12orf71	A8MTZ7	269 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	EFCAB9	A8MZ26	197 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	CXCR6	O00574	342 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	ZNF250	P15622	560 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	GCH1	P30793	250 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	LIPA	P38571	399 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	ARHGDIA	P52565	204 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	UCP2	P55851	309 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	RIN1	Q13671	783 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	FAM120AOS	Q5T036	256 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	FAM27B	Q5VT28	67 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	ZER1	Q7Z7L7	766 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	ZNF584	Q8IVC4	421 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	POU5F2	Q8N7G0	328 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	FAM156A	Q8NDB6	213 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	FAM162A	Q96A26	154 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	MDFI	Q99750	246 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	KCTD14	Q9BQ13	255 aa	Predicted RBP	12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	TPK1	Q9H3S4	243 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	A4GNT	Q9UNA3	340 aa		12.1	□□□□□ -0.47
TPM1-223	ENST00000560445	IGLV3-9	A0A075B6K5	115 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445		B4DSR2	109 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	SHOX2	O60902	331 aa	Predicted RBP	12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	FAM157B	P0CG42	384 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	ANPEP	P15144	967 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	TUBG1	P23258	451 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	IGFBP5	P24593	272 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	STOM	P27105	288 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	RPL4	P36578	427 aa	Known RBP	12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	ALDH3B1	P43353	468 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	NUDT2	P50583	147 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	SLC7A2	P52569	658 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	MYBPC1	Q00872	1141 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	PRKCD	Q05655	676 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	TOP3A	Q13472	1001 aa	Predicted RBP	12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	SGCA	Q16586	387 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	ZNF718	Q3SXZ3	478 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	LIPN	Q5VXI9	398 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	MBOAT2	Q6ZWT7	520 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	CBLL1	Q75N03	491 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	CPLX4	Q7Z7G2	160 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	SYT9	Q86SS6	491 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	GLCCI1	Q86VQ1	547 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	NRM	Q8IXM6	262 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	SLC15A3	Q8IY34	581 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	LRRC18	Q8N456	261 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	MOSPD2	Q8NHP6	518 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	TIMD4	Q96H15	378 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	COG8	Q96MW5	612 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	SNX18	Q96RF0	628 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	ELAC2	Q9BQ52	826 aa	Known RBP	12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	ELOVL3	Q9HB03	270 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	SPAG4	Q9NPE6	437 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	TUBG2	Q9NRH3	451 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	DECR2	Q9NUI1	292 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	GRHPR	Q9UBQ7	328 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	METRN	Q9UJH8	293 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	NDRG4	Q9ULP0	352 aa	Known RBP	12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	SAMD4A	Q9UPU9	718 aa	Known RBP	12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	TIMM10B	Q9Y5J6	103 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	MALRD1	Q5VYJ5	2156 aa		12.09	□□□□□ -0.47
TPM1-223	ENST00000560445	C17orf100	A8MU93	164 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	PHF1	O43189	567 aa	Predicted RBP	12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	TPD52L2	O43399	206 aa	Known RBP	12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	CST2	P09228	141 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	MMP7	P09237	267 aa	Predicted RBP	12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	PATE4	P0C8F1	98 aa		12.08	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms