RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 LHFPL3Q86UP9 236 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 NANOGP1Q8N7R0 232 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 Q8NA96 180 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 ZNF511Q8NB15 262 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 OR10H4Q8NGA5 316 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 FCGR1BQ92637 280 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 OR2M2Q96R28 347 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 ZNF649Q9BS31 505 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 PRORYQ9H606 182 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 ERVK13-1Q9NX77 482 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 KLHL9Q9P2J3 617 aa9.96□□□□□ -0.81
USP3-218ENST00000560202 COA3Q9Y2R0 106 aaPredicted RBP9.96□□□□□ -0.81
USP3-218ENST00000560202 IGKV1D-43A0A0B4J1Z2 117 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 FAM172BPA6NC97 362 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 TVP23AA6NH52 213 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 MYL12BO14950 172 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 ZNHIT1O43257 154 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 SELENOFO60613 162 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 KHDRBS3O75525 346 aaKnown RBP9.96□□□□□ -0.82
USP3-218ENST00000560202 GPANK1O95872 356 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 TFP02787 698 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 CD40LGP29965 261 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 SELENOPP49908 381 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 GP2P55259 537 aaKnown RBP9.96□□□□□ -0.82
USP3-218ENST00000560202 GLO1Q04760 184 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 HIST3H3Q16695 136 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 SYT6Q5T7P8 510 aaPredicted RBP9.96□□□□□ -0.82
USP3-218ENST00000560202 SLC35F2Q8IXU6 374 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 TIGD4Q8IY51 512 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 TMEM123Q8N131 208 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 SMAP2Q8WU79 429 aaPredicted RBP9.96□□□□□ -0.82
USP3-218ENST00000560202 NSMAFQ92636 917 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 HPS1Q92902 700 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 TMEM54Q969K7 222 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 MCHR2Q969V1 340 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 GPR137Q96N19 417 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 FOXN4Q96NZ1 517 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 TBX5Q99593 518 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 MND1Q9BWT6 205 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 INPP5EQ9NRR6 644 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 GLTPQ9NZD2 209 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 NPAP1Q9NZP6 1156 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 ENPP5Q9UJA9 477 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 RCE1Q9Y256 329 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 PTPRQQ9UMZ3 2332 aa9.96□□□□□ -0.82
USP3-218ENST00000560202 TMEM129A0AVI4 362 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 DAPL1A0PJW8 107 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 OR14I1A6ND48 311 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 SLC22A20A6NK97 555 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 GPR171O14626 319 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 HLA-DQA2P01906 255 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 QDPRP09417 244 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 OR2T7P0C7T2 308 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 NR2C1P13056 603 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 PSMB9P28065 219 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 NTF4P34130 210 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 PTGS2P35354 604 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 OPRL1P41146 370 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 CSNK1A1P48729 337 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 HCCSP53701 268 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 ACTC1P68032 377 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 ACTA1P68133 377 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 RNPS1Q15287 305 aaKnown RBP9.95□□□□□ -0.82
USP3-218ENST00000560202 MED22Q15528 200 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 KRTCAP3Q53RY4 240 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 ZNF324BQ6AW86 544 aaPredicted RBP9.95□□□□□ -0.82
USP3-218ENST00000560202 ZNF367Q7RTV3 350 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 AAED1Q7RTV5 226 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 SLC16A9Q7RTY1 509 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 AKAP14Q86UN6 197 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 OR6N1Q8NGY5 312 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 OR2T27Q8NH04 317 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 TMEM45BQ96B21 275 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 INTS12Q96CB8 462 aaKnown RBP9.95□□□□□ -0.82
USP3-218ENST00000560202 OR5M11Q96RB7 305 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 MARCH7Q9H992 704 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 RNF122Q9H9V4 155 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 BCO1Q9HAY6 547 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 EMC3Q9P0I2 261 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 LSM2Q9Y333 95 aaKnown RBP9.95□□□□□ -0.82
USP3-218ENST00000560202 ZNF175Q9Y473 711 aa9.95□□□□□ -0.82
USP3-218ENST00000560202 A0A1W2PQL4 384 aaPredicted RBP9.94□□□□□ -0.82
USP3-218ENST00000560202 ZNF724A8MTY0 619 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 SLC43A1O75387 559 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 TGM6O95932 706 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 ZNF85Q03923 595 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 GALEQ14376 348 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 SPHARQ15513 63 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 TIGD6Q17RP2 521 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 PHYHD1Q5SRE7 291 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 OR2G6Q5TZ20 316 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 LRFN4Q6PJG9 635 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 SLC25A47Q6Q0C1 308 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 FGD2Q7Z6J4 655 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 ADGRE4PQ86SQ3 457 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 MCEMP1Q8IX19 187 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 TUSC5Q8IXB3 177 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 C20orf196Q8IYI0 205 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 KLHL36Q8N4N3 616 aa9.94□□□□□ -0.82
USP3-218ENST00000560202 CISD2Q8N5K1 135 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms